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BARcode DEmixing through Non-negative Spatial Regression (BarDensr).
Chen S, Loper J, Chen X, Vaughan A, Zador AM, Paninski L. Chen S, et al. Among authors: chen x. PLoS Comput Biol. 2021 Mar 8;17(3):e1008256. doi: 10.1371/journal.pcbi.1008256. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33684106 Free PMC article.
Cellular anatomy of the mouse primary motor cortex.
Muñoz-Castañeda R, Zingg B, Matho KS, Chen X, Wang Q, Foster NN, Li A, Narasimhan A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park YG, Bienkowski MS, Chon U, Wheeler DW, Li X, Wang Y, Naeemi M, Xie P, Liu L, Kelly K, An X, Attili SM, Bowman I, Bludova A, Cetin A, Ding L, Drewes R, D'Orazi F, Elowsky C, Fischer S, Galbavy W, Gao L, Gillis J, Groblewski PA, Gou L, Hahn JD, Hatfield JT, Hintiryan H, Huang JJ, Kondo H, Kuang X, Lesnar P, Li X, Li Y, Lin M, Lo D, Mizrachi J, Mok S, Nicovich PR, Palaniswamy R, Palmer J, Qi X, Shen E, Sun YC, Tao HW, Wakemen W, Wang Y, Yao S, Yuan J, Zhan H, Zhu M, Ng L, Zhang LI, Lim BK, Hawrylycz M, Gong H, Gee JC, Kim Y, Chung K, Yang XW, Peng H, Luo Q, Mitra PP, Zador AM, Zeng H, Ascoli GA, Josh Huang Z, Osten P, Harris JA, Dong HW. Muñoz-Castañeda R, et al. Among authors: chen x. Nature. 2021 Oct;598(7879):159-166. doi: 10.1038/s41586-021-03970-w. Epub 2021 Oct 6. Nature. 2021. PMID: 34616071 Free PMC article.
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing.
Zhang A, Jin L, Yao S, Matsuyama M, van Velthoven C, Sullivan H, Sun N, Kellis M, Tasic B, Wickersham IR, Chen X. Zhang A, et al. Among authors: chen x. bioRxiv [Preprint]. 2023 Nov 10:2023.03.16.532873. doi: 10.1101/2023.03.16.532873. bioRxiv. 2023. Update in: Elife. 2024 Feb 06;12:RP87866. doi: 10.7554/eLife.87866 PMID: 36993334 Free PMC article. Updated. Preprint.
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