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AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing.
Bhattacharya T, Brettin T, Doroshow JH, Evrard YA, Greenspan EJ, Gryshuk AL, Hoang TT, Lauzon CBV, Nissley D, Penberthy L, Stahlberg E, Stevens R, Streitz F, Tourassi G, Xia F, Zaki G. Bhattacharya T, et al. Among authors: brettin t. Front Oncol. 2019 Oct 2;9:984. doi: 10.3389/fonc.2019.00984. eCollection 2019. Front Oncol. 2019. PMID: 31632915 Free PMC article. Review.
Predicting tumor cell line response to drug pairs with deep learning.
Xia F, Shukla M, Brettin T, Garcia-Cardona C, Cohn J, Allen JE, Maslov S, Holbeck SL, Doroshow JH, Evrard YA, Stahlberg EA, Stevens RL. Xia F, et al. Among authors: brettin t. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):486. doi: 10.1186/s12859-018-2509-3. BMC Bioinformatics. 2018. PMID: 30577754 Free PMC article.
Learning curves for drug response prediction in cancer cell lines.
Partin A, Brettin T, Evrard YA, Zhu Y, Yoo H, Xia F, Jiang S, Clyde A, Shukla M, Fonstein M, Doroshow JH, Stevens RL. Partin A, et al. Among authors: brettin t. BMC Bioinformatics. 2021 May 17;22(1):252. doi: 10.1186/s12859-021-04163-y. BMC Bioinformatics. 2021. PMID: 34001007 Free PMC article.
A cross-study analysis of drug response prediction in cancer cell lines.
Xia F, Allen J, Balaprakash P, Brettin T, Garcia-Cardona C, Clyde A, Cohn J, Doroshow J, Duan X, Dubinkina V, Evrard Y, Fan YJ, Gans J, He S, Lu P, Maslov S, Partin A, Shukla M, Stahlberg E, Wozniak JM, Yoo H, Zaki G, Zhu Y, Stevens R. Xia F, et al. Among authors: brettin t. Brief Bioinform. 2022 Jan 17;23(1):bbab356. doi: 10.1093/bib/bbab356. Brief Bioinform. 2022. PMID: 34524425 Free PMC article.
CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.
Wozniak JM, Jain R, Balaprakash P, Ozik J, Collier NT, Bauer J, Xia F, Brettin T, Stevens R, Mohd-Yusof J, Cardona CG, Essen BV, Baughman M. Wozniak JM, et al. Among authors: brettin t. BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):491. doi: 10.1186/s12859-018-2508-4. BMC Bioinformatics. 2018. PMID: 30577736 Free PMC article.
184 results