Donald BR - Search Results

1

Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand.

Holt GT, Jou JD, Gill NP, Lowegard AU, Martin JW, Madden DR, Donald BR. Holt GT, et al. Among authors: donald br. J Phys Chem B. 2019 Dec 12;123(49):10441-10455. doi: 10.1021/acs.jpcb.9b07278. Epub 2019 Nov 27. J Phys Chem B. 2019. PMID: 31697075 Free PMC article.

2

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

3

Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Donald BR, Martin J. Donald BR, et al. Prog Nucl Magn Reson Spectrosc. 2009 Aug 1;55(2):101-127. doi: 10.1016/j.pnmrs.2008.12.001. Prog Nucl Magn Reson Spectrosc. 2009. PMID: 20160991 Free PMC article. No abstract available.

4

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. Protein Sci. 2011 Jun;20(6):970-85. doi: 10.1002/pro.620. Epub 2011 Apr 27. Protein Sci. 2011. PMID: 21413097 Free PMC article.

5

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1507-23. doi: 10.1089/cmb.2011.0173. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035328 Free PMC article.

6

Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity.

Roberts KE, Cushing PR, Boisguerin P, Madden DR, Donald BR. Roberts KE, et al. Among authors: donald br. PLoS Comput Biol. 2012;8(4):e1002477. doi: 10.1371/journal.pcbi.1002477. Epub 2012 Apr 19. PLoS Comput Biol. 2012. PMID: 22532795 Free PMC article.

7

Structure of an HIV-1-neutralizing antibody target, the lipid-bound gp41 envelope membrane proximal region trimer.

Reardon PN, Sage H, Dennison SM, Martin JW, Donald BR, Alam SM, Haynes BF, Spicer LD. Reardon PN, et al. Among authors: donald br. Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1391-6. doi: 10.1073/pnas.1309842111. Epub 2014 Jan 13. Proc Natl Acad Sci U S A. 2014. PMID: 24474763 Free PMC article.

8

Systematic solution to homo-oligomeric structures determined by NMR.

Martin JW, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. Proteins. 2015 Apr;83(4):651-61. doi: 10.1002/prot.24768. Epub 2015 Feb 5. Proteins. 2015. PMID: 25620116 Free PMC article.

9

BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design.

Jou JD, Jain S, Georgiev IS, Donald BR. Jou JD, et al. Among authors: donald br. J Comput Biol. 2016 Jun;23(6):413-24. doi: 10.1089/cmb.2015.0194. Epub 2016 Jan 8. J Comput Biol. 2016. PMID: 26744898 Free PMC article.

10

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency.

Hallen MA, Jou JD, Donald BR. Hallen MA, et al. Among authors: donald br. J Comput Biol. 2017 Jun;24(6):536-546. doi: 10.1089/cmb.2016.0136. Epub 2016 Sep 28. J Comput Biol. 2017. PMID: 27681371 Free PMC article.

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