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Page 1
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton JB, Lar… See abstract for full author list ➔ Zhou N, et al. Among authors: pascarelli s. Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8. Genome Biol. 2019. PMID: 31744546 Free PMC article.
CNTNAP2 mutations and autosomal dominant epilepsy with auditory features.
Leonardi E, Dazzo E, Aspromonte MC, Tabaro F, Pascarelli S, Tosatto SCE, Michelucci R, Murgia A, Nobile C. Leonardi E, et al. Among authors: pascarelli s. Epilepsy Res. 2018 Jan;139:51-53. doi: 10.1016/j.eplepsyres.2017.11.006. Epub 2017 Nov 21. Epilepsy Res. 2018. PMID: 29179159
Ferrous Iron Under Oxygen-Rich Conditions in the Deep Mantle.
Boulard E, Harmand M, Guyot F, Lelong G, Morard G, Cabaret D, Boccato S, Rosa AD, Briggs R, Pascarelli S, Fiquet G. Boulard E, et al. Among authors: pascarelli s. Geophys Res Lett. 2019 Feb 16;46(3):1348-1356. doi: 10.1029/2019GL081922. Epub 2019 Feb 14. Geophys Res Lett. 2019. PMID: 31007309 Free PMC article.
High pressure polymorphism of β-TaON.
Woodhead K, Pascarelli S, Hector AL, Briggs R, Alderman N, McMillan PF. Woodhead K, et al. Among authors: pascarelli s. Dalton Trans. 2014 Jul 7;43(25):9647-54. doi: 10.1039/c4dt00805g. Dalton Trans. 2014. PMID: 24831960
Phylogenetic characterization of Bifidobacterium kimbladii sp. nov., a novel species from the honey stomach of the honeybee Apis mellifera.
Modesto M, Scarafile D, Vásquez A, Pukall R, Neumann-Schaal M, Pascarelli S, Sgorbati B, Ancora M, Cammà C, Mattarelli P, Olofsson TC. Modesto M, et al. Among authors: pascarelli s. Syst Appl Microbiol. 2025 Jan;48(1):126579. doi: 10.1016/j.syapm.2025.126579. Epub 2025 Jan 3. Syst Appl Microbiol. 2025. PMID: 39764984
Orthology inference at scale with FastOMA.
Majidian S, Nevers Y, Yazdizadeh Kharrazi A, Warwick Vesztrocy A, Pascarelli S, Moi D, Glover N, Altenhoff AM, Dessimoz C. Majidian S, et al. Among authors: pascarelli s. Nat Methods. 2025 Jan 3. doi: 10.1038/s41592-024-02552-8. Online ahead of print. Nat Methods. 2025. PMID: 39753922
Folate-producing bifidobacteria: metabolism, genetics, and relevance.
D'Aimmo MR, Satti M, Scarafile D, Modesto M, Pascarelli S, Biagini SA, Luiselli D, Mattarelli P, Andlid T. D'Aimmo MR, et al. Among authors: pascarelli s. Microbiome Res Rep. 2023 Dec 12;3(1):11. doi: 10.20517/mrr.2023.59. eCollection 2024. Microbiome Res Rep. 2023. PMID: 38455078 Free PMC article. Review.
ELM-the Eukaryotic Linear Motif resource-2024 update.
Kumar M, Michael S, Alvarado-Valverde J, Zeke A, Lazar T, Glavina J, Nagy-Kanta E, Donagh JM, Kalman ZE, Pascarelli S, Palopoli N, Dobson L, Suarez CF, Van Roey K, Krystkowiak I, Griffin JE, Nagpal A, Bhardwaj R, Diella F, Mészáros B, Dean K, Davey NE, Pancsa R, Chemes LB, Gibson TJ. Kumar M, et al. Among authors: pascarelli s. Nucleic Acids Res. 2024 Jan 5;52(D1):D442-D455. doi: 10.1093/nar/gkad1058. Nucleic Acids Res. 2024. PMID: 37962385 Free PMC article.
89 results