You R - Search Results

1

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.

Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton JB, Lar… See abstract for full author list ➔ Zhou N, et al. Among authors: you r. Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8. Genome Biol. 2019. PMID: 31744546 Free PMC article.

2

GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank.

You R, Zhang Z, Xiong Y, Sun F, Mamitsuka H, Zhu S. You R, et al. Bioinformatics. 2018 Jul 15;34(14):2465-2473. doi: 10.1093/bioinformatics/bty130. Bioinformatics. 2018. PMID: 29522145

3

DeepText2GO: Improving large-scale protein function prediction with deep semantic text representation.

You R, Huang X, Zhu S. You R, et al. Methods. 2018 Aug 1;145:82-90. doi: 10.1016/j.ymeth.2018.05.026. Epub 2018 Jun 6. Methods. 2018. PMID: 29883746

4

NetGO: improving large-scale protein function prediction with massive network information.

You R, Yao S, Xiong Y, Huang X, Sun F, Mamitsuka H, Zhu S. You R, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W379-W387. doi: 10.1093/nar/gkz388. Nucleic Acids Res. 2019. PMID: 31106361 Free PMC article.

5

NetGO 2.0: improving large-scale protein function prediction with massive sequence, text, domain, family and network information.

Yao S, You R, Wang S, Xiong Y, Huang X, Zhu S. Yao S, et al. Among authors: you r. Nucleic Acids Res. 2021 Jul 2;49(W1):W469-W475. doi: 10.1093/nar/gkab398. Nucleic Acids Res. 2021. PMID: 34038555 Free PMC article.

6

DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction.

You R, Yao S, Mamitsuka H, Zhu S. You R, et al. Bioinformatics. 2021 Jul 12;37(Suppl_1):i262-i271. doi: 10.1093/bioinformatics/btab270. Bioinformatics. 2021. PMID: 34252926 Free PMC article.

7

FullMeSH: improving large-scale MeSH indexing with full text.

Dai S, You R, Lu Z, Huang X, Mamitsuka H, Zhu S. Dai S, et al. Among authors: you r. Bioinformatics. 2020 Mar 1;36(5):1533-1541. doi: 10.1093/bioinformatics/btz756. Bioinformatics. 2020. PMID: 31596475 Free PMC article.

8

ARG-SHINE: improve antibiotic resistance class prediction by integrating sequence homology, functional information and deep convolutional neural network.

Wang Z, Li S, You R, Zhu S, Zhou XJ, Sun F. Wang Z, et al. Among authors: you r. NAR Genom Bioinform. 2021 Aug 5;3(3):lqab066. doi: 10.1093/nargab/lqab066. eCollection 2021 Sep. NAR Genom Bioinform. 2021. PMID: 34377977 Free PMC article.

9

BERTMeSH: deep contextual representation learning for large-scale high-performance MeSH indexing with full text.

You R, Liu Y, Mamitsuka H, Zhu S. You R, et al. Bioinformatics. 2021 May 5;37(5):684-692. doi: 10.1093/bioinformatics/btaa837. Bioinformatics. 2021. PMID: 32976559 Free article.

10

DeepMHCII: a novel binding core-aware deep interaction model for accurate MHC-II peptide binding affinity prediction.

You R, Qu W, Mamitsuka H, Zhu S. You R, et al. Bioinformatics. 2022 Jun 24;38(Suppl 1):i220-i228. doi: 10.1093/bioinformatics/btac225. Bioinformatics. 2022. PMID: 35758790 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

680 results

Search Page

Filters