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Systematic approach for validating the ubiquitinated proteome.
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J. Seyfried NT, et al. Among authors: xu p. Anal Chem. 2008 Jun 1;80(11):4161-9. doi: 10.1021/ac702516a. Epub 2008 Apr 24. Anal Chem. 2008. PMID: 18433149 Free PMC article.
First proteomic exploration of protein-encoding genes on chromosome 1 in human liver, stomach, and colon.
Wu S, Li N, Ma J, Shen H, Jiang D, Chang C, Zhang C, Li L, Zhang H, Jiang J, Xu Z, Ping L, Chen T, Zhang W, Zhang T, Xing X, Yi T, Li Y, Fan F, Li X, Zhong F, Wang Q, Zhang Y, Wen B, Yan G, Lin L, Yao J, Lin Z, Wu F, Xie L, Yu H, Liu M, Lu H, Mu H, Li D, Zhu W, Zhen B, Qian X, Qin J, Liu S, Yang P, Zhu Y, Xu P, He F. Wu S, et al. Among authors: xu p, xu z. J Proteome Res. 2013 Jan 4;12(1):67-80. doi: 10.1021/pr3008286. Epub 2012 Dec 20. J Proteome Res. 2013. PMID: 23256928
[Application of proteomics in deubiquitinases research].
Li Y, Gao Y, Xu Z, Lan Q, Xu P. Li Y, et al. Among authors: xu p, xu z. Sheng Wu Gong Cheng Xue Bao. 2014 Sep;30(9):1341-50. Sheng Wu Gong Cheng Xue Bao. 2014. PMID: 25720149 Review. Chinese.
A note on the false discovery rate of novel peptides in proteogenomics.
Zhang K, Fu Y, Zeng WF, He K, Chi H, Liu C, Li YC, Gao Y, Xu P, He SM. Zhang K, et al. Among authors: xu p. Bioinformatics. 2015 Oct 15;31(20):3249-53. doi: 10.1093/bioinformatics/btv340. Epub 2015 Jun 14. Bioinformatics. 2015. PMID: 26076724 Free PMC article.
Special Enrichment Strategies Greatly Increase the Efficiency of Missing Proteins Identification from Regular Proteome Samples.
Su N, Zhang C, Zhang Y, Wang Z, Fan F, Zhao M, Wu F, Gao Y, Li Y, Chen L, Tian M, Zhang T, Wen B, Sensang N, Xiong Z, Wu S, Liu S, Yang P, Zhen B, Zhu Y, He F, Xu P. Su N, et al. Among authors: xu p. J Proteome Res. 2015 Sep 4;14(9):3680-92. doi: 10.1021/acs.jproteome.5b00481. Epub 2015 Jul 15. J Proteome Res. 2015. PMID: 26144840
Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins.
Zhang Y, Li Q, Wu F, Zhou R, Qi Y, Su N, Chen L, Xu S, Jiang T, Zhang C, Cheng G, Chen X, Kong D, Wang Y, Zhang T, Zi J, Wei W, Gao Y, Zhen B, Xiong Z, Wu S, Yang P, Wang Q, Wen B, He F, Xu P, Liu S. Zhang Y, et al. Among authors: xu p, xu s. J Proteome Res. 2015 Sep 4;14(9):3583-94. doi: 10.1021/acs.jproteome.5b00435. J Proteome Res. 2015. PMID: 26282447
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