Bevilacqua PC - Search Results

1

mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity.

Waldron JA, Tack DC, Ritchey LE, Gillen SL, Wilczynska A, Turro E, Bevilacqua PC, Assmann SM, Bushell M, Le Quesne J. Waldron JA, et al. Among authors: bevilacqua pc. Genome Biol. 2019 Dec 30;20(1):300. doi: 10.1186/s13059-019-1901-2. Genome Biol. 2019. PMID: 31888698 Free PMC article.

2

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles.

Mullen MA, Olson KJ, Dallaire P, Major F, Assmann SM, Bevilacqua PC. Mullen MA, et al. Among authors: bevilacqua pc. Nucleic Acids Res. 2010 Dec;38(22):8149-63. doi: 10.1093/nar/gkq804. Epub 2010 Sep 21. Nucleic Acids Res. 2010. PMID: 20860998 Free PMC article.

3

Toward a digital gene response: RNA G-quadruplexes with fewer quartets fold with higher cooperativity.

Mullen MA, Assmann SM, Bevilacqua PC. Mullen MA, et al. Among authors: bevilacqua pc. J Am Chem Soc. 2012 Jan 18;134(2):812-5. doi: 10.1021/ja2096255. Epub 2011 Dec 28. J Am Chem Soc. 2012. PMID: 22239732

4

A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation.

Kwok CK, Ding Y, Sherlock ME, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: bevilacqua pc. Anal Biochem. 2013 Apr 15;435(2):181-6. doi: 10.1016/j.ab.2013.01.008. Epub 2013 Jan 31. Anal Biochem. 2013. PMID: 23399535

5

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Among authors: bevilacqua pc. Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24. Nature. 2014. PMID: 24270811

6

Determination of in vivo RNA structure in low-abundance transcripts.

Kwok CK, Ding Y, Tang Y, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: bevilacqua pc. Nat Commun. 2013;4:2971. doi: 10.1038/ncomms3971. Nat Commun. 2013. PMID: 24336128 Free article.

7

A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.

Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: bevilacqua pc. Biochem J. 2015 Apr 1;467(1):91-102. doi: 10.1042/BJ20141063. Biochem J. 2015. PMID: 25793418

8

The RNA structurome: transcriptome-wide structure probing with next-generation sequencing.

Kwok CK, Tang Y, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: bevilacqua pc. Trends Biochem Sci. 2015 Apr;40(4):221-32. doi: 10.1016/j.tibs.2015.02.005. Epub 2015 Mar 18. Trends Biochem Sci. 2015. PMID: 25797096 Review.

9

StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.

Tang Y, Bouvier E, Kwok CK, Ding Y, Nekrutenko A, Bevilacqua PC, Assmann SM. Tang Y, et al. Among authors: bevilacqua pc. Bioinformatics. 2015 Aug 15;31(16):2668-75. doi: 10.1093/bioinformatics/btv213. Epub 2015 Apr 16. Bioinformatics. 2015. PMID: 25886980 Free PMC article.

10

Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.

Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Among authors: bevilacqua pc. Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18. Nat Protoc. 2015. PMID: 26086407

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