Agris PF - Search Results

1

A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.

Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV 4th, Ranganathan SV, Sarachan KL, Agris PF. Vangaveti S, et al. Among authors: agris pf. J Mol Biol. 2020 Feb 14;432(4):913-929. doi: 10.1016/j.jmb.2019.12.016. Epub 2020 Jan 14. J Mol Biol. 2020. PMID: 31945376 Free PMC article.

2

The role of modifications in codon discrimination by tRNA(Lys)UUU.

Murphy FV 4th, Ramakrishnan V, Malkiewicz A, Agris PF. Murphy FV 4th, et al. Among authors: agris pf. Nat Struct Mol Biol. 2004 Dec;11(12):1186-91. doi: 10.1038/nsmb861. Epub 2004 Nov 21. Nat Struct Mol Biol. 2004. PMID: 15558052

3

Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.

Vendeix FA, Murphy FV 4th, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF. Vendeix FA, et al. Among authors: agris pf. J Mol Biol. 2012 Mar 2;416(4):467-85. doi: 10.1016/j.jmb.2011.12.048. Epub 2011 Dec 29. J Mol Biol. 2012. PMID: 22227389 Free PMC article.

4

Modifications modulate anticodon loop dynamics and codon recognition of E. coli tRNA(Arg1,2).

Cantara WA, Bilbille Y, Kim J, Kaiser R, Leszczyńska G, Malkiewicz A, Agris PF. Cantara WA, et al. Among authors: agris pf. J Mol Biol. 2012 Mar 2;416(4):579-97. doi: 10.1016/j.jmb.2011.12.054. Epub 2012 Jan 3. J Mol Biol. 2012. PMID: 22240457

5

Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position.

Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ. Rodriguez-Hernandez A, et al. Among authors: agris pf. J Mol Biol. 2013 Oct 23;425(20):3888-906. doi: 10.1016/j.jmb.2013.05.018. Epub 2013 May 28. J Mol Biol. 2013. PMID: 23727144 Free PMC article.

6

Expanded use of sense codons is regulated by modified cytidines in tRNA.

Cantara WA, Murphy FV 4th, Demirci H, Agris PF. Cantara WA, et al. Among authors: agris pf. Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10964-9. doi: 10.1073/pnas.1222641110. Epub 2013 Jun 18. Proc Natl Acad Sci U S A. 2013. PMID: 23781103 Free PMC article.

7

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.

Weixlbaumer A, Murphy FV 4th, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V. Weixlbaumer A, et al. Among authors: agris pf. Nat Struct Mol Biol. 2007 Jun;14(6):498-502. doi: 10.1038/nsmb1242. Epub 2007 May 13. Nat Struct Mol Biol. 2007. PMID: 17496902 Free PMC article.

8

Chemical and Conformational Diversity of Modified Nucleosides Affects tRNA Structure and Function.

Väre VY, Eruysal ER, Narendran A, Sarachan KL, Agris PF. Väre VY, et al. Among authors: agris pf. Biomolecules. 2017 Mar 16;7(1):29. doi: 10.3390/biom7010029. Biomolecules. 2017. PMID: 28300792 Free PMC article. Review.

9

The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity.

Agris PF, Narendran A, Sarachan K, Väre VYP, Eruysal E. Agris PF, et al. Enzymes. 2017;41:1-50. doi: 10.1016/bs.enz.2017.03.005. Epub 2017 Apr 22. Enzymes. 2017. PMID: 28601219 Free PMC article. Review.

10

Celebrating wobble decoding: Half a century and still much is new.

Agris PF, Eruysal ER, Narendran A, Väre VYP, Vangaveti S, Ranganathan SV. Agris PF, et al. RNA Biol. 2018;15(4-5):537-553. doi: 10.1080/15476286.2017.1356562. Epub 2017 Sep 21. RNA Biol. 2018. PMID: 28812932 Free PMC article. Review.

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