Ramsey SA - Search Results

1

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

Kashyap A, Rhodes A, Kronmiller B, Berger J, Champagne A, Davis EW, Finnegan MV, Geniza M, Hendrix DA, Löhr CV, Petro VM, Sharpton TJ, Wells J, Epps CW, Jaiswal P, Tyler BM, Ramsey SA. Kashyap A, et al. Among authors: ramsey sa. BMC Genomics. 2020 Feb 12;21(1):153. doi: 10.1186/s12864-019-6432-4. BMC Genomics. 2020. PMID: 32050897 Free PMC article.

2

Cross-species analysis of the canine and human bladder cancer transcriptome and exome.

Ramsey SA, Xu T, Goodall C, Rhodes AC, Kashyap A, He J, Bracha S. Ramsey SA, et al. Genes Chromosomes Cancer. 2017 Apr;56(4):328-343. doi: 10.1002/gcc.22441. Epub 2017 Jan 25. Genes Chromosomes Cancer. 2017. PMID: 28052524

3

Elucidating the transcriptional program of feline injection-site sarcoma using a cross-species mRNA-sequencing approach.

Wei Q, Ramsey SA, Larson MK, Berlow NE, Ochola D, Shiprack C, Kashyap A, Séguin B, Keller C, Löhr CV. Wei Q, et al. Among authors: ramsey sa. BMC Cancer. 2019 Apr 4;19(1):311. doi: 10.1186/s12885-019-5501-z. BMC Cancer. 2019. PMID: 30947707 Free PMC article.

4

Comparative Transcriptomes of Canine and Human Prostate Cancers Identify Mediators of Castration Resistance.

Angel MR, Séguin B, Löhr CV, Beer TM, Feliciano J, Ramsey SA, Thomas GV. Angel MR, et al. Among authors: ramsey sa. Vet Comp Oncol. 2024 Dec;22(4):629-640. doi: 10.1111/vco.13017. Epub 2024 Oct 7. Vet Comp Oncol. 2024. PMID: 39375962

5

Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway.

Ramsey SA, Vengrenyuk Y, Menon P, Podolsky I, Feig JE, Aderem A, Fisher EA, Gold ES. Ramsey SA, et al. PLoS Genet. 2014 Dec 4;10(12):e1004828. doi: 10.1371/journal.pgen.1004828. eCollection 2014 Dec. PLoS Genet. 2014. PMID: 25474352 Free PMC article.

6

A Computational Systems Biology Approach for Identifying Candidate Drugs for Repositioning for Cardiovascular Disease.

Yu AZ, Ramsey SA. Yu AZ, et al. Among authors: ramsey sa. Interdiscip Sci. 2018 Jun;10(2):449-454. doi: 10.1007/s12539-016-0194-3. Epub 2016 Oct 24. Interdiscip Sci. 2018. PMID: 27778232 Free PMC article.

7

Differential gene regulatory networks in development and disease.

Singh AJ, Ramsey SA, Filtz TM, Kioussi C. Singh AJ, et al. Among authors: ramsey sa. Cell Mol Life Sci. 2018 Mar;75(6):1013-1025. doi: 10.1007/s00018-017-2679-6. Epub 2017 Oct 10. Cell Mol Life Sci. 2018. PMID: 29018868 Free PMC article. Review.

8

A Method for Cross-Species Visualization and Analysis of RNA-Sequence Data.

Ramsey SA. Ramsey SA. Methods Mol Biol. 2018;1702:291-305. doi: 10.1007/978-1-4939-7456-6_14. Methods Mol Biol. 2018. PMID: 29119511

9

CERENKOV2: improved detection of functional noncoding SNPs using data-space geometric features.

Yao Y, Liu Z, Wei Q, Ramsey SA. Yao Y, et al. Among authors: ramsey sa. BMC Bioinformatics. 2019 Feb 6;20(1):63. doi: 10.1186/s12859-019-2637-4. BMC Bioinformatics. 2019. PMID: 30727967 Free PMC article.

10

Res2s2aM: Deep residual network-based model for identifying functional noncoding SNPs in trait-associated regions.

Liu Z, Yao Y, Wei Q, Weeder B, Ramsey SA. Liu Z, et al. Among authors: ramsey sa. Pac Symp Biocomput. 2019;24:76-87. Pac Symp Biocomput. 2019. PMID: 30864312 Free article.

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