Li Y - Search Results

1

CD4-binding obstacles in conformational transitions and allosteric communications of HIV gp120.

Li Y, Guo YC, Zhang XL, Deng L, Sang P, Yang LQ, Liu SQ. Li Y, et al. Biochim Biophys Acta Biomembr. 2020 Jun 1;1862(6):183217. doi: 10.1016/j.bbamem.2020.183217. Epub 2020 Feb 13. Biochim Biophys Acta Biomembr. 2020. PMID: 32061646 Free article.

2

Insights into Protein-Ligand Interactions: Mechanisms, Models, and Methods.

Du X, Li Y, Xia YL, Ai SM, Liang J, Sang P, Ji XL, Liu SQ. Du X, et al. Among authors: li y. Int J Mol Sci. 2016 Jan 26;17(2):144. doi: 10.3390/ijms17020144. Int J Mol Sci. 2016. PMID: 26821017 Free PMC article. Review.

3

Comparative thermal unfolding study of psychrophilic and mesophilic subtilisin-like serine proteases by molecular dynamics simulations.

Du X, Sang P, Xia YL, Li Y, Liang J, Ai SM, Ji XL, Fu YX, Liu SQ. Du X, et al. Among authors: li y. J Biomol Struct Dyn. 2017 May;35(7):1500-1517. doi: 10.1080/07391102.2016.1188155. Epub 2016 Aug 2. J Biomol Struct Dyn. 2017. PMID: 27485684 Free article.

4

Insight derived from molecular dynamics simulation into dynamics and molecular motions of cuticle-degrading serine protease Ver112.

Yang LQ, Chen GY, Li Y, Zhang RP, Liu SQ, Sang P. Yang LQ, et al. Among authors: li y. J Biomol Struct Dyn. 2019 May;37(8):2004-2016. doi: 10.1080/07391102.2018.1471418. Epub 2018 May 28. J Biomol Struct Dyn. 2019. PMID: 29718761

5

Effects of CD4 Binding on Conformational Dynamics, Molecular Motions, and Thermodynamics of HIV-1 gp120.

Li Y, Deng L, Yang LQ, Sang P, Liu SQ. Li Y, et al. Int J Mol Sci. 2019 Jan 10;20(2):260. doi: 10.3390/ijms20020260. Int J Mol Sci. 2019. PMID: 30634692 Free PMC article.

6

Insight derived from molecular dynamics simulation into cold-adaptation mechanism of trypsins.

Yang LQ, Yin YR, Shen JX, Li Y, Liu SQ, Sang P. Yang LQ, et al. Among authors: li y. J Biomol Struct Dyn. 2020 Jun;38(9):2768-2776. doi: 10.1080/07391102.2019.1635529. Epub 2019 Jul 1. J Biomol Struct Dyn. 2020. PMID: 31232188

7

Molecular dynamics simulations reveal distinct differences in conformational dynamics and thermodynamics between the unliganded and CD4-bound states of HIV-1 gp120.

Li Y, Deng L, Liang J, Dong GH, Xia YL, Fu YX, Liu SQ. Li Y, et al. Phys Chem Chem Phys. 2020 Mar 11;22(10):5548-5560. doi: 10.1039/c9cp06706j. Phys Chem Chem Phys. 2020. PMID: 32119016

8

Deciphering gp120 sequence variation and structural dynamics in HIV neutralization phenotype by molecular dynamics simulations and graph machine learning.

Li Y, Guo YC, Cheng HH, Zeng X, Zhang XL, Sang P, Chen BH, Yang LQ. Li Y, et al. Proteins. 2022 Jul;90(7):1413-1424. doi: 10.1002/prot.26322. Epub 2022 Feb 28. Proteins. 2022. PMID: 35171521

9

Probing intrinsic dynamics and conformational transition of HIV gp120 by molecular dynamics simulation.

Li Y, Zhang XL, Yuan X, Hou JC, Sang P, Yang LQ. Li Y, et al. RSC Adv. 2020 Aug 18;10(51):30499-30507. doi: 10.1039/d0ra06416e. eCollection 2020 Aug 17. RSC Adv. 2020. PMID: 35516019 Free PMC article.

10

Correction: Probing intrinsic dynamics and conformational transition of HIV gp120 by molecular dynamics simulation.

Li Y, Zhang XL, Yuan X, Hou JC, Sang P, Yang LQ. Li Y, et al. RSC Adv. 2020 Oct 7;10(61):36988. doi: 10.1039/d0ra90094j. eCollection 2020 Oct 7. RSC Adv. 2020. PMID: 35532481 Free PMC article.

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