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Page 1
Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak.
Poen MJ, Pohlmann A, Amid C, Bestebroer TM, Brookes SM, Brown IH, Everett H, Schapendonk CME, Scheuer RD, Smits SL, Beer M, Fouchier RAM, Ellis RJ. Poen MJ, et al. Among authors: amid c. PLoS One. 2020 Feb 20;15(2):e0229326. doi: 10.1371/journal.pone.0229326. eCollection 2020. PLoS One. 2020. PMID: 32078666 Free PMC article.
Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community.
Sala C, Mordhorst H, Grützke J, Brinkmann A, Petersen TN, Poulsen C, Cotter PD, Crispie F, Ellis RJ, Castellani G, Amid C, Hakhverdyan M, Guyader SL, Manfreda G, Mossong J, Nitsche A, Ragimbeau C, Schaeffer J, Schlundt J, Tay MYF, Aarestrup FM, Hendriksen RS, Pamp SJ, De Cesare A. Sala C, et al. Among authors: amid c. Microorganisms. 2020 Nov 25;8(12):1861. doi: 10.3390/microorganisms8121861. Microorganisms. 2020. PMID: 33255715 Free PMC article.
The European Nucleotide Archive in 2019.
Amid C, Alako BTF, Balavenkataraman Kadhirvelu V, Burdett T, Burgin J, Fan J, Harrison PW, Holt S, Hussein A, Ivanov E, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martinez-Villacorta J, Milano A, Pakseresht A, Rahman N, Rajan J, Reddy K, Richards E, Smirnov D, Sokolov A, Vijayaraja S, Cochrane G. Amid C, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D70-D76. doi: 10.1093/nar/gkz1063. Nucleic Acids Res. 2020. PMID: 31722421 Free PMC article.
Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences.
Matamoros S, Hendriksen RS, Pataki BÁ, Pakseresht N, Rossello M, Silvester N, Amid C, Aarestrup FM, Koopmans M, Cochrane G, Csabai I, Lund O, Schultsz C, The Compare Ml-Amr Group. Matamoros S, et al. Among authors: amid c. Microb Genom. 2020 May;6(5):e000342. doi: 10.1099/mgen.0.000342. Epub 2020 Mar 30. Microb Genom. 2020. PMID: 32255760 Free PMC article.
Facing growth in the European Nucleotide Archive.
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V. Cochrane G, et al. Among authors: amid c. Nucleic Acids Res. 2013 Jan;41(Database issue):D30-5. doi: 10.1093/nar/gks1175. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203883 Free PMC article.
European Nucleotide Archive in 2016.
Toribio AL, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Fairley S, Gibson R, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Martínez-Villacorta J, Pakseresht N, Rajan J, Reddy K, Rosello M, Silvester N, Smirnov D, Vaughan D, Zalunin V, Cochrane G. Toribio AL, et al. Among authors: amid c. Nucleic Acids Res. 2017 Jan 4;45(D1):D32-D36. doi: 10.1093/nar/gkw1106. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899630 Free PMC article.
The European Nucleotide Archive in 2017.
Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, Pakseresht N, Rajan J, Rossello M, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G. Silvester N, et al. Among authors: amid c. Nucleic Acids Res. 2018 Jan 4;46(D1):D36-D40. doi: 10.1093/nar/gkx1125. Nucleic Acids Res. 2018. PMID: 29140475 Free PMC article.
The European Nucleotide Archive in 2018.
Harrison PW, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Holt S, Hussein A, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Milano A, Pakseresht N, Rajan J, Reddy K, Richards E, Rosello M, Silvester N, Smirnov D, Toribio AL, Vijayaraja S, Cochrane G. Harrison PW, et al. Among authors: amid c. Nucleic Acids Res. 2019 Jan 8;47(D1):D84-D88. doi: 10.1093/nar/gky1078. Nucleic Acids Res. 2019. PMID: 30395270 Free PMC article.
The COMPARE Data Hubs.
Amid C, Pakseresht N, Silvester N, Jayathilaka S, Lund O, Dynovski LD, Pataki BÁ, Visontai D, Xavier BB, Alako BTF, Belka A, Cisneros JLB, Cotten M, Haringhuizen GB, Harrison PW, Höper D, Holt S, Hundahl C, Hussein A, Kaas RS, Liu X, Leinonen R, Malhotra-Kumar S, Nieuwenhuijse DF, Rahman N, Dos S Ribeiro C, Skiby JE, Schmitz D, Stéger J, Szalai-Gindl JM, Thomsen MCF, Cacciò SM, Csabai I, Kroneman A, Koopmans M, Aarestrup F, Cochrane G. Amid C, et al. Database (Oxford). 2019 Jan 1;2019:baz136. doi: 10.1093/database/baz136. Database (Oxford). 2019. PMID: 31868882 Free PMC article.
Identifying causative mechanisms linking early-life stress to psycho-cardio-metabolic multi-morbidity: The EarlyCause project.
Mariani N, Borsini A, Cecil CAM, Felix JF, Sebert S, Cattaneo A, Walton E, Milaneschi Y, Cochrane G, Amid C, Rajan J, Giacobbe J, Sanz Y, Agustí A, Sorg T, Herault Y, Miettunen J, Parmar P, Cattane N, Jaddoe V, Lötjönen J, Buisan C, González Ballester MA, Piella G, Gelpi JL, Lamers F, Penninx BWJH, Tiemeier H, von Tottleben M, Thiel R, Heil KF, Järvelin MR, Pariante C, Mansuy IM, Lekadir K. Mariani N, et al. Among authors: amid c. PLoS One. 2021 Jan 21;16(1):e0245475. doi: 10.1371/journal.pone.0245475. eCollection 2021. PLoS One. 2021. PMID: 33476328 Free PMC article.
35 results