Lin S - Search Results

1

Author Correction: Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.

Zhou Y, Gerrard DL, Wang J, Li T, Yang Y, Fritz AJ, Rajendran M, Fu X, Stein G, Schiff R, Lin S, Frietze S, Jin VX. Zhou Y, et al. Among authors: lin s. Nat Commun. 2020 Apr 20;11(1):1967. doi: 10.1038/s41467-020-15789-6. Nat Commun. 2020. PMID: 32313124 Free PMC article.

2

Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer.

Chen Z, Lan X, Thomas-Ahner JM, Wu D, Liu X, Ye Z, Wang L, Sunkel B, Grenade C, Chen J, Zynger DL, Yan PS, Huang J, Nephew KP, Huang TH, Lin S, Clinton SK, Li W, Jin VX, Wang Q. Chen Z, et al. Among authors: lin s. EMBO J. 2015 Feb 12;34(4):502-16. doi: 10.15252/embj.201490306. Epub 2014 Dec 22. EMBO J. 2015. PMID: 25535248 Free PMC article.

3

Statistical challenges in analyzing methylation and long-range chromosomal interaction data.

Qin Z, Li B, Conneely KN, Wu H, Hu M, Ayyala D, Park Y, Jin VX, Zhang F, Zhang H, Li L, Lin S. Qin Z, et al. Among authors: lin s. Stat Biosci. 2016 Oct;8(2):284-309. doi: 10.1007/s12561-016-9145-0. Epub 2016 Mar 7. Stat Biosci. 2016. PMID: 28008337 Free PMC article.

4

Three-dimensional analysis reveals altered chromatin interaction by enhancer inhibitors harbors TCF7L2-regulated cancer gene signature.

Gerrard DL, Wang Y, Gaddis M, Zhou Y, Wang J, Witt H, Lin S, Farnham PJ, Jin VX, Frietze SE. Gerrard DL, et al. Among authors: lin s. J Cell Biochem. 2019 Mar;120(3):3056-3070. doi: 10.1002/jcb.27449. Epub 2018 Dec 11. J Cell Biochem. 2019. PMID: 30548288 Free PMC article.

5

Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.

Zhou Y, Gerrard DL, Wang J, Li T, Yang Y, Fritz AJ, Rajendran M, Fu X, Stein G, Schiff R, Lin S, Frietze S, Jin VX. Zhou Y, et al. Among authors: lin s. Nat Commun. 2019 Apr 3;10(1):1522. doi: 10.1038/s41467-019-09320-9. Nat Commun. 2019. PMID: 30944316 Free PMC article.

6

Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.

Zhou Y, Cheng X, Yang Y, Li T, Li J, Huang TH, Wang J, Lin S, Jin VX. Zhou Y, et al. Among authors: lin s. Genome Med. 2020 Aug 12;12(1):69. doi: 10.1186/s13073-020-00769-8. Genome Med. 2020. PMID: 32787954 Free PMC article.

7

HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data.

Xie Q, Han C, Jin V, Lin S. Xie Q, et al. Among authors: lin s. PLoS Comput Biol. 2022 Jun 13;18(6):e1010129. doi: 10.1371/journal.pcbi.1010129. eCollection 2022 Jun. PLoS Comput Biol. 2022. PMID: 35696429 Free PMC article.

8

Integration of scHi-C and scRNA-seq data defines distinct 3D-regulated and biological-context dependent cell subpopulations.

Zhou Y, Li T, Choppavarapu L, Fang K, Lin S, Jin VX. Zhou Y, et al. Among authors: lin s. Nat Commun. 2024 Sep 27;15(1):8310. doi: 10.1038/s41467-024-52440-0. Nat Commun. 2024. PMID: 39333113 Free PMC article.

9

Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.

Yan PS, Potter D, Deatherage DE, Huang TH, Lin S. Yan PS, et al. Among authors: lin s. Methods Mol Biol. 2009;507:89-106. doi: 10.1007/978-1-59745-522-0_8. Methods Mol Biol. 2009. PMID: 18987809

10

Bayesian LASSO for population stratification correction in rare haplotype association studies.

Liu Z, Turkmen AS, Lin S. Liu Z, et al. Among authors: lin s. Stat Appl Genet Mol Biol. 2024 Jan 19;23(1):20220034. doi: 10.1515/sagmb-2022-0034. eCollection 2024 Jan 1. Stat Appl Genet Mol Biol. 2024. PMID: 38235525 Free PMC article.

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