Wang J - Search Results

1

Author Correction: Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.

Zhou Y, Gerrard DL, Wang J, Li T, Yang Y, Fritz AJ, Rajendran M, Fu X, Stein G, Schiff R, Lin S, Frietze S, Jin VX. Zhou Y, et al. Among authors: wang j. Nat Commun. 2020 Apr 20;11(1):1967. doi: 10.1038/s41467-020-15789-6. Nat Commun. 2020. PMID: 32313124 Free PMC article.

2

High resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technology.

Lan X, Adams C, Landers M, Dudas M, Krissinger D, Marnellos G, Bonneville R, Xu M, Wang J, Huang TH, Meredith G, Jin VX. Lan X, et al. Among authors: wang j. PLoS One. 2011;6(7):e22226. doi: 10.1371/journal.pone.0022226. Epub 2011 Jul 11. PLoS One. 2011. PMID: 21779396 Free PMC article.

3

Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation.

Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX. Wang J, et al. BMC Genomics. 2013 Jan 31;14:70. doi: 10.1186/1471-2164-14-70. BMC Genomics. 2013. PMID: 23368971 Free PMC article.

4

Three-dimensional analysis reveals altered chromatin interaction by enhancer inhibitors harbors TCF7L2-regulated cancer gene signature.

Gerrard DL, Wang Y, Gaddis M, Zhou Y, Wang J, Witt H, Lin S, Farnham PJ, Jin VX, Frietze SE. Gerrard DL, et al. Among authors: wang j, wang y. J Cell Biochem. 2019 Mar;120(3):3056-3070. doi: 10.1002/jcb.27449. Epub 2018 Dec 11. J Cell Biochem. 2019. PMID: 30548288 Free PMC article.

5

Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.

Zhou Y, Gerrard DL, Wang J, Li T, Yang Y, Fritz AJ, Rajendran M, Fu X, Stein G, Schiff R, Lin S, Frietze S, Jin VX. Zhou Y, et al. Among authors: wang j. Nat Commun. 2019 Apr 3;10(1):1522. doi: 10.1038/s41467-019-09320-9. Nat Commun. 2019. PMID: 30944316 Free PMC article.

6

Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.

Zhou Y, Cheng X, Yang Y, Li T, Li J, Huang TH, Wang J, Lin S, Jin VX. Zhou Y, et al. Among authors: wang j. Genome Med. 2020 Aug 12;12(1):69. doi: 10.1186/s13073-020-00769-8. Genome Med. 2020. PMID: 32787954 Free PMC article.

7

The 3D genomic landscape of differential response to EGFR/HER2 inhibition in endocrine-resistant breast cancer cells.

Yang Y, Choppavarapu L, Fang K, Naeini AS, Nosirov B, Li J, Yang K, He Z, Zhou Y, Schiff R, Li R, Hu Y, Wang J, Jin VX. Yang Y, et al. Among authors: wang j. Biochim Biophys Acta Gene Regul Mech. 2020 Nov;1863(11):194631. doi: 10.1016/j.bbagrm.2020.194631. Epub 2020 Sep 19. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 32956836 Free PMC article.

8

Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance.

Li J, Fang K, Choppavarapu L, Yang K, Yang Y, Wang J, Cao R, Jatoi I, Jin VX. Li J, et al. Among authors: wang j. Clin Epigenetics. 2021 Sep 17;13(1):175. doi: 10.1186/s13148-021-01167-6. Clin Epigenetics. 2021. PMID: 34535185 Free PMC article.

9

abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis.

Ali O, Farooq A, Yang M, Jin VX, Bjørås M, Wang J. Ali O, et al. Among authors: wang j. BMC Bioinformatics. 2022 Mar 3;23(1):83. doi: 10.1186/s12859-022-04615-z. BMC Bioinformatics. 2022. PMID: 35240993 Free PMC article.

10

Mapping nucleosome and chromatin architectures: A survey of computational methods.

Fang K, Wang J, Liu L, Jin VX. Fang K, et al. Among authors: wang j. Comput Struct Biotechnol J. 2022 Jul 26;20:3955-3962. doi: 10.1016/j.csbj.2022.07.037. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35950186 Free PMC article. Review.

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