Gsponer J - Search Results

1

LIST-S2: taxonomy based sorting of deleterious missense mutations across species.

Malhis N, Jacobson M, Jones SJM, Gsponer J. Malhis N, et al. Among authors: gsponer j. Nucleic Acids Res. 2020 Jul 2;48(W1):W154-W161. doi: 10.1093/nar/gkaa288. Nucleic Acids Res. 2020. PMID: 32352516 Free PMC article.

2

Computational identification of MoRFs in protein sequences.

Malhis N, Gsponer J. Malhis N, et al. Among authors: gsponer j. Bioinformatics. 2015 Jun 1;31(11):1738-44. doi: 10.1093/bioinformatics/btv060. Epub 2015 Jan 30. Bioinformatics. 2015. PMID: 25637562 Free PMC article.

3

Computational Identification of MoRFs in Protein Sequences Using Hierarchical Application of Bayes Rule.

Malhis N, Wong ET, Nassar R, Gsponer J. Malhis N, et al. Among authors: gsponer j. PLoS One. 2015 Oct 30;10(10):e0141603. doi: 10.1371/journal.pone.0141603. eCollection 2015. PLoS One. 2015. PMID: 26517836 Free PMC article.

4

MoRFchibi SYSTEM: software tools for the identification of MoRFs in protein sequences.

Malhis N, Jacobson M, Gsponer J. Malhis N, et al. Among authors: gsponer j. Nucleic Acids Res. 2016 Jul 8;44(W1):W488-93. doi: 10.1093/nar/gkw409. Epub 2016 May 12. Nucleic Acids Res. 2016. PMID: 27174932 Free PMC article.

5

Improved measures for evolutionary conservation that exploit taxonomy distances.

Malhis N, Jones SJM, Gsponer J. Malhis N, et al. Among authors: gsponer j. Nat Commun. 2019 Apr 5;10(1):1556. doi: 10.1038/s41467-019-09583-2. Nat Commun. 2019. PMID: 30952844 Free PMC article.

6

Protein-Protein Interactions Mediated by Intrinsically Disordered Protein Regions Are Enriched in Missense Mutations.

Wong ETC, So V, Guron M, Kuechler ER, Malhis N, Bui JM, Gsponer J. Wong ETC, et al. Among authors: gsponer j. Biomolecules. 2020 Jul 24;10(8):1097. doi: 10.3390/biom10081097. Biomolecules. 2020. PMID: 32722039 Free PMC article.

7

DescribePROT: database of amino acid-level protein structure and function predictions.

Zhao B, Katuwawala A, Oldfield CJ, Dunker AK, Faraggi E, Gsponer J, Kloczkowski A, Malhis N, Mirdita M, Obradovic Z, Söding J, Steinegger M, Zhou Y, Kurgan L. Zhao B, et al. Among authors: gsponer j. Nucleic Acids Res. 2021 Jan 8;49(D1):D298-D308. doi: 10.1093/nar/gkaa931. Nucleic Acids Res. 2021. PMID: 33119734 Free PMC article.

8

Critical assessment of protein intrinsic disorder prediction.

Necci M, Piovesan D; CAID Predictors; DisProt Curators; Tosatto SCE. Necci M, et al. Nat Methods. 2021 May;18(5):472-481. doi: 10.1038/s41592-021-01117-3. Epub 2021 Apr 19. Nat Methods. 2021. PMID: 33875885 Free PMC article.

9

GraPES: The Granule Protein Enrichment Server for prediction of biological condensate constituents.

Kuechler ER, Jacobson M, Mayor T, Gsponer J. Kuechler ER, et al. Among authors: gsponer j. Nucleic Acids Res. 2022 Jul 5;50(W1):W384-W391. doi: 10.1093/nar/gkac279. Nucleic Acids Res. 2022. PMID: 35474477 Free PMC article.

10

DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.

Basu S, Zhao B, Biró B, Faraggi E, Gsponer J, Hu G, Kloczkowski A, Malhis N, Mirdita M, Söding J, Steinegger M, Wang D, Wang K, Xu D, Zhang J, Kurgan L. Basu S, et al. Among authors: gsponer j. Nucleic Acids Res. 2024 Jan 5;52(D1):D426-D433. doi: 10.1093/nar/gkad985. Nucleic Acids Res. 2024. PMID: 37933852 Free PMC article.

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