Churkin A - Search Results

1

Modeling-Based Response-Guided Glecaprevir-Pibrentasvir Therapy for Chronic Hepatitis C to Identify Patients for Ultrashort Treatment Duration.

Dasgupta S, Imamura M, Gorstein E, Nakahara T, Tsuge M, Churkin A, Yardeni D, Etzion O, Uprichard SL, Barash D, Cotler SJ, Dahari H, Chayama K. Dasgupta S, et al. Among authors: churkin a. J Infect Dis. 2020 Sep 1;222(7):1165-1169. doi: 10.1093/infdis/jiaa219. J Infect Dis. 2020. PMID: 32363394 Free PMC article.

2

RNAmute: RNA secondary structure mutation analysis tool.

Churkin A, Barash D. Churkin A, et al. BMC Bioinformatics. 2006 Apr 25;7:221. doi: 10.1186/1471-2105-7-221. BMC Bioinformatics. 2006. PMID: 16638137 Free PMC article.

3

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.

Churkin A, Barash D. Churkin A, et al. BMC Bioinformatics. 2008 Apr 29;9:222. doi: 10.1186/1471-2105-9-222. BMC Bioinformatics. 2008. PMID: 18445289 Free PMC article.

4

Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV.

Churkin A, Cohen M, Shemer-Avni Y, Barash D. Churkin A, et al. J Bioinform Comput Biol. 2010 Dec;8(6):1013-26. doi: 10.1142/s0219720010005087. J Bioinform Comput Biol. 2010. PMID: 21121024

5

Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.

Barash D, Churkin A. Barash D, et al. Among authors: churkin a. Brief Bioinform. 2011 Mar;12(2):104-14. doi: 10.1093/bib/bbq059. Epub 2010 Aug 11. Brief Bioinform. 2011. PMID: 21422070 Review.

6

The RNAmute web server for the mutational analysis of RNA secondary structures.

Churkin A, Gabdank I, Barash D. Churkin A, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W92-9. doi: 10.1093/nar/gkr207. Epub 2011 Apr 7. Nucleic Acids Res. 2011. PMID: 21478166 Free PMC article.

7

RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences.

Avihoo A, Churkin A, Barash D. Avihoo A, et al. Among authors: churkin a. BMC Bioinformatics. 2011 Aug 3;12:319. doi: 10.1186/1471-2105-12-319. BMC Bioinformatics. 2011. PMID: 21813013 Free PMC article.

8

Efficient procedures for the numerical simulation of mid-size RNA kinetics.

Aviram I, Veltman I, Churkin A, Barash D. Aviram I, et al. Among authors: churkin a. Algorithms Mol Biol. 2012 Sep 7;7(1):24. doi: 10.1186/1748-7188-7-24. Algorithms Mol Biol. 2012. PMID: 22958879 Free PMC article.

9

On topological indices for small RNA graphs.

Churkin A, Gabdank I, Barash D. Churkin A, et al. Comput Biol Chem. 2012 Dec;41:35-40. doi: 10.1016/j.compbiolchem.2012.10.004. Epub 2012 Oct 23. Comput Biol Chem. 2012. PMID: 23147564

10

RNA dot plots: an image representation for RNA secondary structure analysis and manipulations.

Churkin A, Barash D. Churkin A, et al. Wiley Interdiscip Rev RNA. 2013 Mar-Apr;4(2):205-16. doi: 10.1002/wrna.1154. Epub 2013 Feb 5. Wiley Interdiscip Rev RNA. 2013. PMID: 23386427 Review.

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