Ataman M - Search Results

1

Analysis of human metabolism by reducing the complexity of the genome-scale models using redHUMAN.

Masid M, Ataman M, Hatzimanikatis V. Masid M, et al. Among authors: ataman m. Nat Commun. 2020 Jun 4;11(1):2821. doi: 10.1038/s41467-020-16549-2. Nat Commun. 2020. PMID: 32499584 Free PMC article.

2

Molecular thermodynamics of metabolism: quantum thermochemical calculations for key metabolites.

Hadadi N, Ataman M, Hatzimanikatis V, Panayiotou C. Hadadi N, et al. Among authors: ataman m. Phys Chem Chem Phys. 2015 Apr 28;17(16):10438-53. doi: 10.1039/c4cp05825a. Phys Chem Chem Phys. 2015. PMID: 25799954

3

Heading in the right direction: thermodynamics-based network analysis and pathway engineering.

Ataman M, Hatzimanikatis V. Ataman M, et al. Curr Opin Biotechnol. 2015 Dec;36:176-82. doi: 10.1016/j.copbio.2015.08.021. Epub 2015 Sep 16. Curr Opin Biotechnol. 2015. PMID: 26360871 Free article. Review.

4

Molecular thermodynamics of metabolism: hydration quantities and the equation-of-state approach.

Panayiotou C, Mastrogeorgopoulos S, Ataman M, Hadadi N, Hatzimanikatis V. Panayiotou C, et al. Among authors: ataman m. Phys Chem Chem Phys. 2016 Nov 30;18(47):32570-32592. doi: 10.1039/c6cp06281d. Phys Chem Chem Phys. 2016. PMID: 27874110

5

Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks.

Chiappino-Pepe A, Tymoshenko S, Ataman M, Soldati-Favre D, Hatzimanikatis V. Chiappino-Pepe A, et al. Among authors: ataman m. PLoS Comput Biol. 2017 Mar 23;13(3):e1005397. doi: 10.1371/journal.pcbi.1005397. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28333921 Free PMC article.

6

Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas.

Islam MA, Hadadi N, Ataman M, Hatzimanikatis V, Stephanopoulos G. Islam MA, et al. Among authors: ataman m. Metab Eng. 2017 May;41:173-181. doi: 10.1016/j.ymben.2017.04.005. Epub 2017 Apr 19. Metab Eng. 2017. PMID: 28433737

7

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.

Ataman M, Hernandez Gardiol DF, Fengos G, Hatzimanikatis V. Ataman M, et al. PLoS Comput Biol. 2017 Jul 20;13(7):e1005444. doi: 10.1371/journal.pcbi.1005444. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28727725 Free PMC article.

8

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites.

Ataman M, Hatzimanikatis V. Ataman M, et al. PLoS Comput Biol. 2017 Jul 20;13(7):e1005513. doi: 10.1371/journal.pcbi.1005513. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28727789 Free PMC article.

9

Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors.

Tokic M, Hadadi N, Ataman M, Neves D, Ebert BE, Blank LM, Miskovic L, Hatzimanikatis V. Tokic M, et al. Among authors: ataman m. ACS Synth Biol. 2018 Aug 17;7(8):1858-1873. doi: 10.1021/acssynbio.8b00049. Epub 2018 Aug 7. ACS Synth Biol. 2018. PMID: 30021444

10

Kinetic models of metabolism that consider alternative steady-state solutions of intracellular fluxes and concentrations.

Hameri T, Fengos G, Ataman M, Miskovic L, Hatzimanikatis V. Hameri T, et al. Among authors: ataman m. Metab Eng. 2019 Mar;52:29-41. doi: 10.1016/j.ymben.2018.10.005. Epub 2018 Oct 26. Metab Eng. 2019. PMID: 30455161 Free article.

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