Zhu Q - Search Results

1

Enhancer dependence of cell-type-specific gene expression increases with developmental age.

Cai W, Huang J, Zhu Q, Li BE, Seruggia D, Zhou P, Nguyen M, Fujiwara Y, Xie H, Yang Z, Hong D, Ren P, Xu J, Pu WT, Yuan GC, Orkin SH. Cai W, et al. Among authors: zhu q. Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21450-21458. doi: 10.1073/pnas.2008672117. Epub 2020 Aug 19. Proc Natl Acad Sci U S A. 2020. PMID: 32817427 Free PMC article.

2

Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch.

Liu N, Hargreaves VV, Zhu Q, Kurland JV, Hong J, Kim W, Sher F, Macias-Trevino C, Rogers JM, Kurita R, Nakamura Y, Yuan GC, Bauer DE, Xu J, Bulyk ML, Orkin SH. Liu N, et al. Among authors: zhu q. Cell. 2018 Apr 5;173(2):430-442.e17. doi: 10.1016/j.cell.2018.03.016. Epub 2018 Mar 29. Cell. 2018. PMID: 29606353 Free PMC article.

3

Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data.

Zhu Q, Shah S, Dries R, Cai L, Yuan GC. Zhu Q, et al. Nat Biotechnol. 2018 Oct 29:10.1038/nbt.4260. doi: 10.1038/nbt.4260. Online ahead of print. Nat Biotechnol. 2018. PMID: 30371680 Free PMC article.

4

Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas.

Suo S, Zhu Q, Saadatpour A, Fei L, Guo G, Yuan GC. Suo S, et al. Among authors: zhu q. Cell Rep. 2018 Nov 6;25(6):1436-1445.e3. doi: 10.1016/j.celrep.2018.10.045. Cell Rep. 2018. PMID: 30404000 Free PMC article.

5

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.

Eng CL, Lawson M, Zhu Q, Dries R, Koulena N, Takei Y, Yun J, Cronin C, Karp C, Yuan GC, Cai L. Eng CL, et al. Among authors: zhu q. Nature. 2019 Apr;568(7751):235-239. doi: 10.1038/s41586-019-1049-y. Epub 2019 Mar 25. Nature. 2019. PMID: 30911168 Free PMC article.

6

Accurate estimation of cell-type composition from gene expression data.

Tsoucas D, Dong R, Chen H, Zhu Q, Guo G, Yuan GC. Tsoucas D, et al. Among authors: zhu q. Nat Commun. 2019 Jul 5;10(1):2975. doi: 10.1038/s41467-019-10802-z. Nat Commun. 2019. PMID: 31278265 Free PMC article.

7

CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis.

Zhu Q, Liu N, Orkin SH, Yuan GC. Zhu Q, et al. Genome Biol. 2019 Sep 9;20(1):192. doi: 10.1186/s13059-019-1802-4. Genome Biol. 2019. PMID: 31500663 Free PMC article.

8

Transcription factor competition at the γ-globin promoters controls hemoglobin switching.

Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Liu N, et al. Among authors: zhu q. Nat Genet. 2021 Apr;53(4):511-520. doi: 10.1038/s41588-021-00798-y. Epub 2021 Mar 1. Nat Genet. 2021. PMID: 33649594 Free PMC article.

9

Giotto: a toolbox for integrative analysis and visualization of spatial expression data.

Dries R, Zhu Q, Dong R, Eng CL, Li H, Liu K, Fu Y, Zhao T, Sarkar A, Bao F, George RE, Pierson N, Cai L, Yuan GC. Dries R, et al. Among authors: zhu q. Genome Biol. 2021 Mar 8;22(1):78. doi: 10.1186/s13059-021-02286-2. Genome Biol. 2021. PMID: 33685491 Free PMC article.

10

Author Correction: Transcription factor competition at the γ-globin promoters controls hemoglobin switching.

Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Liu N, et al. Among authors: zhu q. Nat Genet. 2021 Apr;53(4):586. doi: 10.1038/s41588-021-00834-x. Nat Genet. 2021. PMID: 33731942 Free PMC article. No abstract available.

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