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Predicting antimicrobial resistance using conserved genes.
Nguyen M, Olson R, Shukla M, VanOeffelen M, Davis JJ. Nguyen M, et al. Among authors: davis jj. PLoS Comput Biol. 2020 Oct 19;16(10):e1008319. doi: 10.1371/journal.pcbi.1008319. eCollection 2020 Oct. PLoS Comput Biol. 2020. PMID: 33075053 Free PMC article.
Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area.
Long SW, Olsen RJ, Christensen PA, Bernard DW, Davis JJ, Shukla M, Nguyen M, Saavedra MO, Yerramilli P, Pruitt L, Subedi S, Kuo HC, Hendrickson H, Eskandari G, Nguyen HAT, Long JH, Kumaraswami M, Goike J, Boutz D, Gollihar J, McLellan JS, Chou CW, Javanmardi K, Finkelstein IJ, Musser JM. Long SW, et al. Among authors: davis jj. mBio. 2020 Oct 30;11(6):e02707-20. doi: 10.1128/mBio.02707-20. mBio. 2020. PMID: 33127862 Free PMC article.
Predicting Antimicrobial Resistance Using Partial Genome Alignments.
Aytan-Aktug D, Nguyen M, Clausen PTLC, Stevens RL, Aarestrup FM, Lund O, Davis JJ. Aytan-Aktug D, et al. Among authors: davis jj. mSystems. 2021 Jun 29;6(3):e0018521. doi: 10.1128/mSystems.00185-21. Epub 2021 Jun 15. mSystems. 2021. PMID: 34128695 Free PMC article.
Trajectory of Growth of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants in Houston, Texas, January through May 2021, Based on 12,476 Genome Sequences.
Olsen RJ, Christensen PA, Long SW, Subedi S, Hodjat P, Olson R, Nguyen M, Davis JJ, Yerramilli P, Saavedra MO, Pruitt L, Reppond K, Shyer MN, Cambric J, Gadd R, Thakur RM, Batajoo A, Finkelstein IJ, Gollihar J, Musser JM. Olsen RJ, et al. Among authors: davis jj. Am J Pathol. 2021 Oct;191(10):1754-1773. doi: 10.1016/j.ajpath.2021.07.002. Epub 2021 Jul 23. Am J Pathol. 2021. PMID: 34303698 Free PMC article.
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.
VanOeffelen M, Nguyen M, Aytan-Aktug D, Brettin T, Dietrich EM, Kenyon RW, Machi D, Mao C, Olson R, Pusch GD, Shukla M, Stevens R, Vonstein V, Warren AS, Wattam AR, Yoo H, Davis JJ. VanOeffelen M, et al. Among authors: davis jj. Brief Bioinform. 2021 Nov 5;22(6):bbab313. doi: 10.1093/bib/bbab313. Brief Bioinform. 2021. PMID: 34379107 Free PMC article.
362 results