Xu YY - Search Results

1

Automated classification of protein subcellular localization in immunohistochemistry images to reveal biomarkers in colon cancer.

Xue ZZ, Wu Y, Gao QZ, Zhao L, Xu YY. Xue ZZ, et al. Among authors: xu yy. BMC Bioinformatics. 2020 Sep 9;21(1):398. doi: 10.1186/s12859-020-03731-y. BMC Bioinformatics. 2020. PMID: 32907537 Free PMC article.

2

An image-based multi-label human protein subcellular localization predictor (iLocator) reveals protein mislocalizations in cancer tissues.

Xu YY, Yang F, Zhang Y, Shen HB. Xu YY, et al. Bioinformatics. 2013 Aug 15;29(16):2032-40. doi: 10.1093/bioinformatics/btt320. Epub 2013 Jun 4. Bioinformatics. 2013. PMID: 23740749 Free PMC article.

3

Bioimaging-based detection of mislocalized proteins in human cancers by semi-supervised learning.

Xu YY, Yang F, Zhang Y, Shen HB. Xu YY, et al. Bioinformatics. 2015 Apr 1;31(7):1111-9. doi: 10.1093/bioinformatics/btu772. Epub 2014 Nov 19. Bioinformatics. 2015. PMID: 25414362 Free PMC article.

4

Incorporating organelle correlations into semi-supervised learning for protein subcellular localization prediction.

Xu YY, Yang F, Shen HB. Xu YY, et al. Bioinformatics. 2016 Jul 15;32(14):2184-92. doi: 10.1093/bioinformatics/btw219. Epub 2016 Apr 23. Bioinformatics. 2016. PMID: 27153655

5

Learning complex subcellular distribution patterns of proteins via analysis of immunohistochemistry images.

Xu YY, Shen HB, Murphy RF. Xu YY, et al. Bioinformatics. 2020 Mar 1;36(6):1908-1914. doi: 10.1093/bioinformatics/btz844. Bioinformatics. 2020. PMID: 31722369 Free PMC article.

6

Consistency and variation of protein subcellular location annotations.

Xu YY, Zhou H, Murphy RF, Shen HB. Xu YY, et al. Proteins. 2021 Feb;89(2):242-250. doi: 10.1002/prot.26010. Epub 2020 Sep 26. Proteins. 2021. PMID: 32935893 Free PMC article.

7

Incorporating label correlations into deep neural networks to classify protein subcellular location patterns in immunohistochemistry images.

Hu JX, Yang Y, Xu YY, Shen HB. Hu JX, et al. Among authors: xu yy. Proteins. 2022 Feb;90(2):493-503. doi: 10.1002/prot.26244. Epub 2021 Oct 1. Proteins. 2022. PMID: 34546597

8

DULoc: quantitatively unmixing protein subcellular location patterns in immunofluorescence images based on deep learning features.

Xue MQ, Zhu XL, Wang G, Xu YY. Xue MQ, et al. Among authors: xu yy. Bioinformatics. 2022 Jan 12;38(3):827-833. doi: 10.1093/bioinformatics/btab730. Bioinformatics. 2022. PMID: 34694372

9

Improving Protein Subcellular Location Classification by Incorporating Three-Dimensional Structure Information.

Wang G, Zhai YJ, Xue ZZ, Xu YY. Wang G, et al. Among authors: xu yy. Biomolecules. 2021 Oct 29;11(11):1607. doi: 10.3390/biom11111607. Biomolecules. 2021. PMID: 34827605 Free PMC article.

10

Learning protein subcellular localization multi-view patterns from heterogeneous data of imaging, sequence and networks.

Wang G, Xue MQ, Shen HB, Xu YY. Wang G, et al. Among authors: xu yy. Brief Bioinform. 2022 Mar 10;23(2):bbab539. doi: 10.1093/bib/bbab539. Brief Bioinform. 2022. PMID: 35018423

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