Lund O - Search Results

1

Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning.

Pataki BÁ, Matamoros S, van der Putten BCL, Remondini D, Giampieri E, Aytan-Aktug D, Hendriksen RS, Lund O, Csabai I, Schultsz C; SPS COMPARE ML-AMR group. Pataki BÁ, et al. Among authors: lund o. Sci Rep. 2020 Sep 14;10(1):15026. doi: 10.1038/s41598-020-71693-5. Sci Rep. 2020. PMID: 32929164 Free PMC article.

2

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

Joensen KG, Engsbro ALØ, Lukjancenko O, Kaas RS, Lund O, Westh H, Aarestrup FM. Joensen KG, et al. Among authors: lund o. Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1325-1338. doi: 10.1007/s10096-017-2947-2. Epub 2017 Mar 11. Eur J Clin Microbiol Infect Dis. 2017. PMID: 28285331 Free PMC article.

3

Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks.

Aytan-Aktug D, Clausen PTLC, Bortolaia V, Aarestrup FM, Lund O. Aytan-Aktug D, et al. Among authors: lund o. mSystems. 2020 Jan 21;5(1):e00774-19. doi: 10.1128/mSystems.00774-19. mSystems. 2020. PMID: 31964771 Free PMC article.

4

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering.

Ahrenfeldt J, Waisi M, Loft IC, Clausen PTLC, Allesøe R, Szarvas J, Hendriksen RS, Aarestrup FM, Lund O. Ahrenfeldt J, et al. Among authors: lund o. Sci Rep. 2020 Feb 20;10(1):3033. doi: 10.1038/s41598-020-59292-w. Sci Rep. 2020. PMID: 32080241 Free PMC article.

5

Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform.

Szarvas J, Ahrenfeldt J, Cisneros JLB, Thomsen MCF, Aarestrup FM, Lund O. Szarvas J, et al. Among authors: lund o. Commun Biol. 2020 Mar 20;3(1):137. doi: 10.1038/s42003-020-0869-5. Commun Biol. 2020. PMID: 32198478 Free PMC article.

6

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides.

Olsen TH, Yesiltas B, Marin FI, Pertseva M, García-Moreno PJ, Gregersen S, Overgaard MT, Jacobsen C, Lund O, Hansen EB, Marcatili P. Olsen TH, et al. Among authors: lund o. Sci Rep. 2020 Dec 8;10(1):21471. doi: 10.1038/s41598-020-78319-w. Sci Rep. 2020. PMID: 33293615 Free PMC article.

7

Predicting Antimicrobial Resistance Using Partial Genome Alignments.

Aytan-Aktug D, Nguyen M, Clausen PTLC, Stevens RL, Aarestrup FM, Lund O, Davis JJ. Aytan-Aktug D, et al. Among authors: lund o. mSystems. 2021 Jun 29;6(3):e0018521. doi: 10.1128/mSystems.00185-21. Epub 2021 Jun 15. mSystems. 2021. PMID: 34128695 Free PMC article.

8

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest.

Aytan-Aktug D, Clausen PTLC, Szarvas J, Munk P, Otani S, Nguyen M, Davis JJ, Lund O, Aarestrup FM. Aytan-Aktug D, et al. Among authors: lund o. mSystems. 2022 Apr 26;7(2):e0118021. doi: 10.1128/msystems.01180-21. Epub 2022 Apr 6. mSystems. 2022. PMID: 35382558 Free PMC article.

9

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies.

Aytan-Aktug D, Grigorjev V, Szarvas J, Clausen PTLC, Munk P, Nguyen M, Davis JJ, Aarestrup FM, Lund O. Aytan-Aktug D, et al. Among authors: lund o. Microbiol Spectr. 2022 Dec 21;10(6):e0264122. doi: 10.1128/spectrum.02641-22. Epub 2022 Nov 15. Microbiol Spectr. 2022. PMID: 36377945 Free PMC article.

10

Erratum to: Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

Joensen KG, Engsbro ALØ, Lukjancenko O, Kaas RS, Lund O, Westh H, Aarestrup FM. Joensen KG, et al. Among authors: lund o. Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1339-1342. doi: 10.1007/s10096-017-2993-9. Eur J Clin Microbiol Infect Dis. 2017. PMID: 28488022 Free PMC article. No abstract available.

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