Xie X - Search Results

1

Development and external validation of a prognostic tool for COVID-19 critical disease.

Chow DS, Glavis-Bloom J, Soun JE, Weinberg B, Loveless TB, Xie X, Mutasa S, Monuki E, Park JI, Bota D, Wu J, Thompson L, Boden-Albala B, Khan S, Amin AN, Chang PD. Chow DS, et al. Among authors: xie x. PLoS One. 2020 Dec 9;15(12):e0242953. doi: 10.1371/journal.pone.0242953. eCollection 2020. PLoS One. 2020. PMID: 33296357 Free PMC article.

2

Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression.

Wu J, Xie X. Wu J, et al. Among authors: xie x. Genome Biol. 2006;7(9):R85. doi: 10.1186/gb-2006-7-9-r85. Genome Biol. 2006. PMID: 17002790 Free PMC article.

3

Discovering regulatory motifs in the Plasmodium genome using comparative genomics.

Wu J, Sieglaff DH, Gervin J, Xie XS. Wu J, et al. Bioinformatics. 2008 Sep 1;24(17):1843-9. doi: 10.1093/bioinformatics/btn348. Epub 2008 Jul 8. Bioinformatics. 2008. PMID: 18611947 Free PMC article.

4

Lineage tracing and analog recording in mammalian cells by single-site DNA writing.

Loveless TB, Grotts JH, Schechter MW, Forouzmand E, Carlson CK, Agahi BS, Liang G, Ficht M, Liu B, Xie X, Liu CC. Loveless TB, et al. Among authors: xie x. Nat Chem Biol. 2021 Jun;17(6):739-747. doi: 10.1038/s41589-021-00769-8. Epub 2021 Mar 22. Nat Chem Biol. 2021. PMID: 33753928 Free PMC article.

5

SAILER: scalable and accurate invariant representation learning for single-cell ATAC-seq processing and integration.

Cao Y, Fu L, Wu J, Peng Q, Nie Q, Zhang J, Xie X. Cao Y, et al. Among authors: xie x. Bioinformatics. 2021 Jul 12;37(Suppl_1):i317-i326. doi: 10.1093/bioinformatics/btab303. Bioinformatics. 2021. PMID: 34252968 Free PMC article.

6

UFold: fast and accurate RNA secondary structure prediction with deep learning.

Fu L, Cao Y, Wu J, Peng Q, Nie Q, Xie X. Fu L, et al. Among authors: xie x. Nucleic Acids Res. 2022 Feb 22;50(3):e14. doi: 10.1093/nar/gkab1074. Nucleic Acids Res. 2022. PMID: 34792173 Free PMC article.

7

Identifying dysregulated regions in amyotrophic lateral sclerosis through chromatin accessibility outliers.

Çelik MH, Gagneur J, Lim RG, Wu J, Thompson LM, Xie X. Çelik MH, et al. Among authors: xie x. HGG Adv. 2024 Jul 18;5(3):100318. doi: 10.1016/j.xhgg.2024.100318. Epub 2024 Jun 13. HGG Adv. 2024. PMID: 38872308 Free PMC article.

8

Low-rank regularization for learning gene expression programs.

Ye G, Tang M, Cai JF, Nie Q, Xie X. Ye G, et al. Among authors: xie x. PLoS One. 2013 Dec 17;8(12):e82146. doi: 10.1371/journal.pone.0082146. eCollection 2013. PLoS One. 2013. PMID: 24358148 Free PMC article.

9

Integrated analysis of multimodal single-cell data with structural similarity.

Cao Y, Fu L, Wu J, Peng Q, Nie Q, Zhang J, Xie X. Cao Y, et al. Among authors: xie x. Nucleic Acids Res. 2022 Nov 28;50(21):e121. doi: 10.1093/nar/gkac781. Nucleic Acids Res. 2022. PMID: 36130281 Free PMC article.

10

Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer.

Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X. Watanabe K, et al. Among authors: xie x. PLoS One. 2014 Mar 20;9(3):e92317. doi: 10.1371/journal.pone.0092317. eCollection 2014. PLoS One. 2014. PMID: 24651522 Free PMC article.

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