Bekker GJ - Search Results

1

Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.

Emori M, Numoto N, Senga A, Bekker GJ, Kamiya N, Kobayashi Y, Ito N, Kawai F, Oda M. Emori M, et al. Among authors: bekker gj. Proteins. 2021 May;89(5):502-511. doi: 10.1002/prot.26034. Epub 2020 Dec 24. Proteins. 2021. PMID: 33340163

2

Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor.

Bekker GJ, Kamiya N, Araki M, Fukuda I, Okuno Y, Nakamura H. Bekker GJ, et al. J Chem Theory Comput. 2017 Jun 13;13(6):2389-2399. doi: 10.1021/acs.jctc.6b01127. Epub 2017 May 18. J Chem Theory Comput. 2017. PMID: 28482660

3

Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism.

Oda M, Inaba S, Kamiya N, Bekker GJ, Mikami B. Oda M, et al. Among authors: bekker gj. Biochim Biophys Acta Proteins Proteom. 2018 Mar;1866(3):415-425. doi: 10.1016/j.bbapap.2017.12.004. Epub 2017 Dec 12. Biochim Biophys Acta Proteins Proteom. 2018. PMID: 29246508

4

Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca²⁺-Driven Catalytic Cycle.

Numoto N, Kamiya N, Bekker GJ, Yamagami Y, Inaba S, Ishii K, Uchiyama S, Kawai F, Ito N, Oda M. Numoto N, et al. Among authors: bekker gj. Biochemistry. 2018 Sep 11;57(36):5289-5300. doi: 10.1021/acs.biochem.8b00624. Epub 2018 Aug 27. Biochemistry. 2018. PMID: 30110540

5

Thermal stability of single-domain antibodies estimated by molecular dynamics simulations.

Bekker GJ, Ma B, Kamiya N. Bekker GJ, et al. Protein Sci. 2019 Feb;28(2):429-438. doi: 10.1002/pro.3546. Epub 2018 Dec 20. Protein Sci. 2019. PMID: 30394618 Free PMC article.

6

Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations.

Bekker GJ, Araki M, Oshima K, Okuno Y, Kamiya N. Bekker GJ, et al. J Phys Chem B. 2019 Mar 21;123(11):2479-2490. doi: 10.1021/acs.jpcb.8b12419. Epub 2019 Mar 12. J Phys Chem B. 2019. PMID: 30808168

7

Metal binding to cutinase-like enzyme from Saccharomonospora viridis AHK190 and its effects on enzyme activity and stability.

Senga A, Hantani Y, Bekker GJ, Kamiya N, Kimura Y, Kawai F, Oda M. Senga A, et al. Among authors: bekker gj. J Biochem. 2019 Aug 1;166(2):149-156. doi: 10.1093/jb/mvz020. J Biochem. 2019. PMID: 30825308

8

Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations.

Bekker GJ, Fukuda I, Higo J, Kamiya N. Bekker GJ, et al. Sci Rep. 2020 Jan 29;10(1):1406. doi: 10.1038/s41598-020-58320-z. Sci Rep. 2020. PMID: 31996730 Free PMC article.

9

Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking.

Bekker GJ, Araki M, Oshima K, Okuno Y, Kamiya N. Bekker GJ, et al. J Comput Chem. 2020 Jun 30;41(17):1606-1615. doi: 10.1002/jcc.26203. Epub 2020 Apr 8. J Comput Chem. 2020. PMID: 32267975

10

Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization.

Oda M, Numoto N, Bekker GJ, Kamiya N, Kawai F. Oda M, et al. Among authors: bekker gj. Methods Enzymol. 2021;648:159-185. doi: 10.1016/bs.mie.2020.12.031. Epub 2021 Feb 4. Methods Enzymol. 2021. PMID: 33579402

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

34 results

Search Page

Filters