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On the effective depth of viral sequence data.
Illingworth CJR, Roy S, Beale MA, Tutill H, Williams R, Breuer J. Illingworth CJR, et al. Among authors: roy s. Virus Evol. 2017 Nov 14;3(2):vex030. doi: 10.1093/ve/vex030. eCollection 2017 Jul. Virus Evol. 2017. PMID: 29250429 Free PMC article.
Use of Whole-Genome Sequencing of Adenovirus in Immunocompromised Pediatric Patients to Identify Nosocomial Transmission and Mixed-Genotype Infection.
Houldcroft CJ, Roy S, Morfopoulou S, Margetts BK, Depledge DP, Cudini J, Shah D, Brown JR, Romero EY, Williams R, Cloutman-Green E, Rao K, Standing JF, Hartley JC, Breuer J. Houldcroft CJ, et al. Among authors: roy s. J Infect Dis. 2018 Sep 8;218(8):1261-1271. doi: 10.1093/infdis/jiy323. J Infect Dis. 2018. PMID: 29917114
Mutagenesis in Norovirus in Response to Favipiravir Treatment.
Ruis C, Brown LK, Roy S, Atkinson C, Williams R, Burns SO, Yara-Romero E, Jacobs M, Goldstein R, Breuer J, Lowe DM. Ruis C, et al. Among authors: roy s. N Engl J Med. 2018 Nov 29;379(22):2173-2176. doi: 10.1056/NEJMc1806941. N Engl J Med. 2018. PMID: 30485769 Free article. No abstract available.
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination.
Cudini J, Roy S, Houldcroft CJ, Bryant JM, Depledge DP, Tutill H, Veys P, Williams R, Worth AJJ, Tamuri AU, Goldstein RA, Breuer J. Cudini J, et al. Among authors: roy s. Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5693-5698. doi: 10.1073/pnas.1818130116. Epub 2019 Feb 28. Proc Natl Acad Sci U S A. 2019. PMID: 30819890 Free PMC article.
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