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Aligning optical maps to de Bruijn graphs.
Mukherjee K, Alipanahi B, Kahveci T, Salmela L, Boucher C. Mukherjee K, et al. Among authors: salmela l. Bioinformatics. 2019 Sep 15;35(18):3250-3256. doi: 10.1093/bioinformatics/btz069. Bioinformatics. 2019. PMID: 30698651
Kermit: linkage map guided long read assembly.
Walve R, Rastas P, Salmela L. Walve R, et al. Among authors: salmela l. Algorithms Mol Biol. 2019 Mar 20;14:8. doi: 10.1186/s13015-019-0143-x. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 30930956 Free PMC article.
Fast scaffolding with small independent mixed integer programs.
Salmela L, Mäkinen V, Välimäki N, Ylinen J, Ukkonen E. Salmela L, et al. Bioinformatics. 2011 Dec 1;27(23):3259-65. doi: 10.1093/bioinformatics/btr562. Epub 2011 Oct 13. Bioinformatics. 2011. PMID: 21998153 Free PMC article.
59 results