Mahfouz A - Search Results

1

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain.

Joglekar A, Prjibelski A, Mahfouz A, Collier P, Lin S, Schlusche AK, Marrocco J, Williams SR, Haase B, Hayes A, Chew JG, Weisenfeld NI, Wong MY, Stein AN, Hardwick SA, Hunt T, Wang Q, Dieterich C, Bent Z, Fedrigo O, Sloan SA, Risso D, Jarvis ED, Flicek P, Luo W, Pitt GS, Frankish A, Smit AB, Ross ME, Tilgner HU. Joglekar A, et al. Among authors: mahfouz a. Nat Commun. 2021 Jan 19;12(1):463. doi: 10.1038/s41467-020-20343-5. Nat Commun. 2021. PMID: 33469025 Free PMC article.

2

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells.

Gupta I, Collier PG, Haase B, Mahfouz A, Joglekar A, Floyd T, Koopmans F, Barres B, Smit AB, Sloan SA, Luo W, Fedrigo O, Ross ME, Tilgner HU. Gupta I, et al. Among authors: mahfouz a. Nat Biotechnol. 2018 Oct 15. doi: 10.1038/nbt.4259. Online ahead of print. Nat Biotechnol. 2018. PMID: 30320766

3

Conserved cell types with divergent features in human versus mouse cortex.

Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES. Hodge RD, et al. Among authors: mahfouz a. Nature. 2019 Sep;573(7772):61-68. doi: 10.1038/s41586-019-1506-7. Epub 2019 Aug 21. Nature. 2019. PMID: 31435019 Free PMC article.

4

Hierarchical progressive learning of cell identities in single-cell data.

Michielsen L, Reinders MJT, Mahfouz A. Michielsen L, et al. Among authors: mahfouz a. Nat Commun. 2021 May 14;12(1):2799. doi: 10.1038/s41467-021-23196-8. Nat Commun. 2021. PMID: 33990598 Free PMC article.

5

Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models.

Heezen LGM, Abdelaal T, van Putten M, Aartsma-Rus A, Mahfouz A, Spitali P. Heezen LGM, et al. Among authors: mahfouz a. Nat Commun. 2023 Aug 15;14(1):4909. doi: 10.1038/s41467-023-40555-9. Nat Commun. 2023. PMID: 37582915 Free PMC article.

6

Integration of mass cytometry and mass spectrometry imaging for spatially resolved single-cell metabolic profiling.

Nunes JB, Ijsselsteijn ME, Abdelaal T, Ursem R, van der Ploeg M, Giera M, Everts B, Mahfouz A, Heijs B, de Miranda NFCC. Nunes JB, et al. Among authors: mahfouz a. Nat Methods. 2024 Oct;21(10):1796-1800. doi: 10.1038/s41592-024-02392-6. Epub 2024 Aug 29. Nat Methods. 2024. PMID: 39210066 Free PMC article.

7

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Babaei S, Mahfouz A, Hulsman M, Lelieveldt BP, de Ridder J, Reinders M. Babaei S, et al. Among authors: mahfouz a. PLoS Comput Biol. 2015 May 12;11(5):e1004221. doi: 10.1371/journal.pcbi.1004221. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 25965262 Free PMC article.

8

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome.

Huisman SMH, van Lew B, Mahfouz A, Pezzotti N, Höllt T, Michielsen L, Vilanova A, Reinders MJT, Lelieveldt BPF. Huisman SMH, et al. Among authors: mahfouz a. Nucleic Acids Res. 2017 Jun 2;45(10):e83. doi: 10.1093/nar/gkx046. Nucleic Acids Res. 2017. PMID: 28132031 Free PMC article.

9

Single-cell RNA sequencing in facioscapulohumeral muscular dystrophy disease etiology and development.

van den Heuvel A, Mahfouz A, Kloet SL, Balog J, van Engelen BGM, Tawil R, Tapscott SJ, van der Maarel SM. van den Heuvel A, et al. Among authors: mahfouz a. Hum Mol Genet. 2019 Apr 1;28(7):1064-1075. doi: 10.1093/hmg/ddy400. Hum Mol Genet. 2019. PMID: 30445587 Free PMC article.

10

A comparison of automatic cell identification methods for single-cell RNA sequencing data.

Abdelaal T, Michielsen L, Cats D, Hoogduin D, Mei H, Reinders MJT, Mahfouz A. Abdelaal T, et al. Among authors: mahfouz a. Genome Biol. 2019 Sep 9;20(1):194. doi: 10.1186/s13059-019-1795-z. Genome Biol. 2019. PMID: 31500660 Free PMC article.

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