Papenfuss AT - Search Results

1

tidybulk: an R tidy framework for modular transcriptomic data analysis.

Mangiola S, Molania R, Dong R, Doyle MA, Papenfuss AT. Mangiola S, et al. Among authors: papenfuss at. Genome Biol. 2021 Jan 22;22(1):42. doi: 10.1186/s13059-020-02233-7. Genome Biol. 2021. PMID: 33482892 Free PMC article.

2

Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment.

Li J, Doyle MA, Saeed I, Wong SQ, Mar V, Goode DL, Caramia F, Doig K, Ryland GL, Thompson ER, Hunter SM, Halgamuge SK, Ellul J, Dobrovic A, Campbell IG, Papenfuss AT, McArthur GA, Tothill RW. Li J, et al. Among authors: papenfuss at. PLoS One. 2014 Apr 21;9(4):e95217. doi: 10.1371/journal.pone.0095217. eCollection 2014. PLoS One. 2014. PMID: 24752294 Free PMC article.

3

Digital PCR of Genomic Rearrangements for Monitoring Circulating Tumour DNA.

Do H, Cameron D, Molania R, Thapa B, Rivalland G, Mitchell PL, Murone C, John T, Papenfuss A, Dobrovic A. Do H, et al. Adv Exp Med Biol. 2016;924:139-146. doi: 10.1007/978-3-319-42044-8_27. Adv Exp Med Biol. 2016. PMID: 27753035

4

Genomic characterisation of Eμ-Myc mouse lymphomas identifies Bcor as a Myc co-operative tumour-suppressor gene.

Lefebure M, Tothill RW, Kruse E, Hawkins ED, Shortt J, Matthews GM, Gregory GP, Martin BP, Kelly MJ, Todorovski I, Doyle MA, Lupat R, Li J, Schroeder J, Wall M, Craig S, Poortinga G, Cameron D, Bywater M, Kats L, Gearhart MD, Bardwell VJ, Dickins RA, Hannan RD, Papenfuss AT, Johnstone RW. Lefebure M, et al. Among authors: papenfuss at. Nat Commun. 2017 Mar 6;8:14581. doi: 10.1038/ncomms14581. Nat Commun. 2017. PMID: 28262675 Free PMC article.

5

PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories.

Doig KD, Fellowes A, Bell AH, Seleznev A, Ma D, Ellul J, Li J, Doyle MA, Thompson ER, Kumar A, Lara L, Vedururu R, Reid G, Conway T, Papenfuss AT, Fox SB. Doig KD, et al. Among authors: papenfuss at. Genome Med. 2017 Apr 24;9(1):38. doi: 10.1186/s13073-017-0427-z. Genome Med. 2017. PMID: 28438193 Free PMC article.

6

A statistical framework for analyzing deep mutational scanning data.

Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, Fowler DM. Rubin AF, et al. Among authors: papenfuss at. Genome Biol. 2017 Aug 7;18(1):150. doi: 10.1186/s13059-017-1272-5. Genome Biol. 2017. PMID: 28784151 Free PMC article.

7

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly.

Cameron DL, Schröder J, Penington JS, Do H, Molania R, Dobrovic A, Speed TP, Papenfuss AT. Cameron DL, et al. Among authors: papenfuss at. Genome Res. 2017 Dec;27(12):2050-2060. doi: 10.1101/gr.222109.117. Epub 2017 Nov 2. Genome Res. 2017. PMID: 29097403 Free PMC article.

8

Correction to: A statistical framework for analyzing deep mutational scanning data.

Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, Fowler DM. Rubin AF, et al. Among authors: papenfuss at. Genome Biol. 2018 Feb 7;19(1):17. doi: 10.1186/s13059-018-1391-7. Genome Biol. 2018. PMID: 29415752 Free PMC article.

9

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity.

Cheng Y, Makara M, Peel E, Fox S, Papenfuss AT, Belov K. Cheng Y, et al. Among authors: papenfuss at. Commun Biol. 2019 Mar 13;2:99. doi: 10.1038/s42003-019-0342-5. eCollection 2019. Commun Biol. 2019. PMID: 30886908 Free PMC article.

10

Androgen deprivation therapy promotes an obesity-like microenvironment in periprostatic fat.

Mangiola S, Stuchbery R, McCoy P, Chow K, Kurganovs N, Kerger M, Papenfuss A, Hovens CM, Corcoran NM. Mangiola S, et al. Endocr Connect. 2019 May 1;8(5):547-558. doi: 10.1530/EC-19-0029. Endocr Connect. 2019. PMID: 30959474 Free PMC article.

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