Risso D - Search Results

1

mbkmeans: Fast clustering for single cell data using mini-batch k-means.

Hicks SC, Liu R, Ni Y, Purdom E, Risso D. Hicks SC, et al. Among authors: risso d. PLoS Comput Biol. 2021 Jan 26;17(1):e1008625. doi: 10.1371/journal.pcbi.1008625. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497379 Free PMC article.

2

Discontinuation of anti-epileptic therapy: a retrospective study of 86 children and adolescents.

Matricardi A, Bertamino F, Risso D. Matricardi A, et al. Among authors: risso d. Ital J Neurol Sci. 1995 Dec;16(9):613-22. doi: 10.1007/BF02230911. Ital J Neurol Sci. 1995. PMID: 8838787 Clinical Trial.

3

A novel approach to the clustering of microarray data via nonparametric density estimation.

De Bin R, Risso D. De Bin R, et al. Among authors: risso d. BMC Bioinformatics. 2011 Feb 8;12:49. doi: 10.1186/1471-2105-12-49. BMC Bioinformatics. 2011. PMID: 21303507 Free PMC article.

4

Normalizing single-cell RNA sequencing data: challenges and opportunities.

Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC. Vallejos CA, et al. Among authors: risso d. Nat Methods. 2017 Jun;14(6):565-571. doi: 10.1038/nmeth.4292. Epub 2017 May 15. Nat Methods. 2017. PMID: 28504683 Free PMC article.

5

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.

Fletcher RB, Das D, Gadye L, Street KN, Baudhuin A, Wagner A, Cole MB, Flores Q, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J. Fletcher RB, et al. Among authors: risso d. Cell Stem Cell. 2017 Jun 1;20(6):817-830.e8. doi: 10.1016/j.stem.2017.04.003. Epub 2017 May 11. Cell Stem Cell. 2017. PMID: 28506465 Free PMC article.

6

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.

Perraudeau F, Risso D, Street K, Purdom E, Dudoit S. Perraudeau F, et al. Among authors: risso d. F1000Res. 2017 Jul 21;6:1158. doi: 10.12688/f1000research.12122.1. eCollection 2017. F1000Res. 2017. PMID: 28868140 Free PMC article.

7

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities.

Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Gadye L, et al. Among authors: risso d. Cell Stem Cell. 2017 Dec 7;21(6):775-790.e9. doi: 10.1016/j.stem.2017.10.014. Epub 2017 Nov 22. Cell Stem Cell. 2017. PMID: 29174333 Free PMC article.

8

A general and flexible method for signal extraction from single-cell RNA-seq data.

Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. Risso D, et al. Nat Commun. 2018 Jan 18;9(1):284. doi: 10.1038/s41467-017-02554-5. Nat Commun. 2018. PMID: 29348443 Free PMC article.

9

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: risso d. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

10

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

Street K, Risso D, Fletcher RB, Das D, Ngai J, Yosef N, Purdom E, Dudoit S. Street K, et al. Among authors: risso d. BMC Genomics. 2018 Jun 19;19(1):477. doi: 10.1186/s12864-018-4772-0. BMC Genomics. 2018. PMID: 29914354 Free PMC article.

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