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A general calculus of fitness landscapes finds genes under selection in cancers.
Hsu TK, Asmussen J, Koire A, Choi BK, Gadhikar MA, Huh E, Lin CH, Konecki DM, Kim YW, Pickering CR, Kimmel M, Donehower LA, Frederick MJ, Myers JN, Katsonis P, Lichtarge O. Hsu TK, et al. Among authors: konecki dm. Genome Res. 2022 May;32(5):916-929. doi: 10.1101/gr.275811.121. Epub 2022 Mar 17. Genome Res. 2022. PMID: 35301263 Free PMC article.
Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and the greater coronavirus family.
Wang C, Konecki DM, Marciano DC, Govindarajan H, Williams AM, Wastuwidyaningtyas B, Bourquard T, Katsonis P, Lichtarge O. Wang C, et al. Among authors: konecki dm. Res Sq [Preprint]. 2021 Feb 15:rs.3.rs-95030. doi: 10.21203/rs.3.rs-95030/v1. Res Sq. 2021. Update in: Bioinformatics. 2021 Nov 18;37(22):4033-4040. doi: 10.1093/bioinformatics/btab406 PMID: 33106800 Free PMC article. Updated. Preprint.