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HPV-EM: an accurate HPV detection and genotyping EM algorithm.
Inkman MJ, Jayachandran K, Ellis TM, Ruiz F, McLellan MD, Miller CA, Wu Y, Ojesina AI, Schwarz JK, Zhang J. Inkman MJ, et al. Sci Rep. 2020 Aug 31;10(1):14340. doi: 10.1038/s41598-020-71300-7. Sci Rep. 2020. PMID: 32868873 Free PMC article.
Standardized Uptake Value for 18F-Fluorodeoxyglucose Is a Marker of Inflammatory State and Immune Infiltrate in Cervical Cancer.
Floberg JM, Zhang J, Muhammad N, DeWees TA, Inkman M, Chen K, Lin AJ, Rashmi R, Jayachandran K, Edelson BT, Siegel BA, Dehdashti F, Grigsby PW, Markovina S, Schwarz JK. Floberg JM, et al. Among authors: inkman m. Clin Cancer Res. 2021 Aug 1;27(15):4245-4255. doi: 10.1158/1078-0432.CCR-20-4450. Epub 2021 Apr 5. Clin Cancer Res. 2021. PMID: 33820781 Free PMC article.
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.
Creason A, Haan D, Dang K, Chiotti KE, Inkman M, Lamb A, Yu T, Hu Y, Norman TC, Buchanan A, van Baren MJ, Spangler R, Rollins MR, Spellman PT, Rozanov D, Zhang J, Maher CA, Caloian C, Watson JD, Uhrig S, Haas BJ, Jain M, Akeson M, Ahsen ME; SMC-RNA Challenge Participants; Stolovitzky G, Guinney J, Boutros PC, Stuart JM, Ellrott K. Creason A, et al. Among authors: inkman m. Cell Syst. 2021 Aug 18;12(8):827-838.e5. doi: 10.1016/j.cels.2021.05.021. Epub 2021 Jun 18. Cell Syst. 2021. PMID: 34146471 Free PMC article.
HPV transcript expression affects cervical cancer response to chemoradiation.
Ruiz FJ, Inkman M, Rashmi R, Muhammad N, Gabriel N, Miller CA, McLellan MD, Goldstein M, Markovina S, Grigsby PW, Zhang J, Schwarz JK. Ruiz FJ, et al. Among authors: inkman m. JCI Insight. 2021 Aug 23;6(16):e138734. doi: 10.1172/jci.insight.138734. JCI Insight. 2021. PMID: 34255749 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 34700648
DANSR: A Tool for the Detection of Annotated and Novel Small RNAs.
Zhang J, Eteleeb AM, Rozycki EB, Inkman MJ, Ly A, Scharf RE, Jayachandran K, Krasnick BA, Mazur T, White NM, Fields RC, Maher CA. Zhang J, et al. Among authors: inkman mj. Noncoding RNA. 2022 Jan 13;8(1):9. doi: 10.3390/ncrna8010009. Noncoding RNA. 2022. PMID: 35076605 Free PMC article.
Pan-Cancer Analysis Reveals Recurrent BCAR4 Gene Fusions across Solid Tumors.
Nickless A, Zhang J, Othoum G, Webster J, Inkman MJ, Coonrod E, Fontes S, Rozycki EB, Maher CA, White NM. Nickless A, et al. Among authors: inkman mj. Mol Cancer Res. 2022 Oct 4;20(10):1481-1488. doi: 10.1158/1541-7786.MCR-21-0775. Mol Cancer Res. 2022. PMID: 35852383 Free PMC article.
Radiation-induced circulating myeloid-derived suppressor cells induce systemic lymphopenia after chemoradiotherapy in patients with glioblastoma.
Ghosh S, Huang J, Inkman M, Zhang J, Thotala S, Tikhonova E, Miheecheva N, Frenkel F, Ataullakhanov R, Wang X, DeNardo D, Hallahan D, Thotala D. Ghosh S, et al. Among authors: inkman m. Sci Transl Med. 2023 Jan 25;15(680):eabn6758. doi: 10.1126/scitranslmed.abn6758. Epub 2023 Jan 25. Sci Transl Med. 2023. PMID: 36696484 Free PMC article.
17 results