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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences.
Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, Sansom RS, Feuda R, Fleming JF, Sugahara F, Cummins C, Patricio M, Akanni W, D'Aniello S, Bertolucci C, Irie N, Alev C, Sheng G, de Mendoza A, Maeso I, Irimia M, Fromm B, Peterson KJ, Das S, Hirano M, Rast JP, Cooper MD, Paps J, Pisani D, Kuratani S, Martin FJ, Wang W, Donoghue PCJ, Zhang YE, Pascual-Anaya J. Yu D, et al. Among authors: fromm b. Nat Ecol Evol. 2024 Mar;8(3):519-535. doi: 10.1038/s41559-023-02299-z. Epub 2024 Jan 12. Nat Ecol Evol. 2024. PMID: 38216617 Free PMC article.
Insights into early animal evolution from the genome of the xenacoelomorph worm Xenoturbella bocki.
Schiffer PH, Natsidis P, Leite DJ, Robertson HE, Lapraz F, Marlétaz F, Fromm B, Baudry L, Simpson F, Høye E, Zakrzewski AC, Kapli P, Hoff KJ, Müller S, Marbouty M, Marlow H, Copley RR, Koszul R, Sarkies P, Telford MJ. Schiffer PH, et al. Among authors: fromm b. Elife. 2024 Aug 7;13:e94948. doi: 10.7554/eLife.94948. Elife. 2024. PMID: 39109482 Free PMC article.
Large scale changes in the transcriptome of Eisenia fetida during regeneration.
Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, Fromm B, Peterson KJ, Scaria V, Sivasubbu S, Pillai B. Bhambri A, et al. Among authors: fromm b. PLoS One. 2018 Sep 27;13(9):e0204234. doi: 10.1371/journal.pone.0204234. eCollection 2018. PLoS One. 2018. PMID: 30260966 Free PMC article.
Unicellular Origin of the Animal MicroRNA Machinery.
Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. Bråte J, et al. Among authors: fromm b. Curr Biol. 2018 Oct 22;28(20):3288-3295.e5. doi: 10.1016/j.cub.2018.08.018. Epub 2018 Oct 11. Curr Biol. 2018. PMID: 30318349 Free PMC article.
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D132-D141. doi: 10.1093/nar/gkz885. Nucleic Acids Res. 2020. PMID: 31598695 Free PMC article.
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Fromm B, et al. Trends Genet. 2020 Jul;36(7):461-463. doi: 10.1016/j.tig.2020.03.007. Epub 2020 Apr 16. Trends Genet. 2020. PMID: 32544447
Encyclopedia of tools for the analysis of miRNA isoforms.
Schmartz GP, Kern F, Fehlmann T, Wagner V, Fromm B, Keller A. Schmartz GP, et al. Among authors: fromm b. Brief Bioinform. 2021 Jul 20;22(4):bbaa346. doi: 10.1093/bib/bbaa346. Brief Bioinform. 2021. PMID: 33313643
138 results