Chen PY - Search Results

1

Accelerated antimicrobial discovery via deep generative models and molecular dynamics simulations.

Das P, Sercu T, Wadhawan K, Padhi I, Gehrmann S, Cipcigan F, Chenthamarakshan V, Strobelt H, Dos Santos C, Chen PY, Yang YY, Tan JPK, Hedrick J, Crain J, Mojsilovic A. Das P, et al. Among authors: chen py. Nat Biomed Eng. 2021 Jun;5(6):613-623. doi: 10.1038/s41551-021-00689-x. Epub 2021 Mar 11. Nat Biomed Eng. 2021. PMID: 33707779

2

Author Correction: Accelerated antimicrobial discovery via deep generative models and molecular dynamics simulations.

Das P, Sercu T, Wadhawan K, Padhi I, Gehrmann S, Cipcigan F, Chenthamarakshan V, Strobelt H, Dos Santos C, Chen PY, Yang YY, Tan JPK, Hedrick J, Crain J, Mojsilovic A. Das P, et al. Among authors: chen py. Nat Biomed Eng. 2021 Aug;5(8):942. doi: 10.1038/s41551-021-00771-4. Nat Biomed Eng. 2021. PMID: 34183803 No abstract available.

3

Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design.

Cao Y, Das P, Chenthamarakshan V, Chen PY, Melnyk I, Shen Y. Cao Y, et al. Among authors: chen py. Proc Mach Learn Res. 2021 Jul;139:1261-1271. Proc Mach Learn Res. 2021. PMID: 34423306 Free PMC article.

4

Network properties determine neural network performance.

Jiang C, Huang Z, Pedapati T, Chen PY, Sun Y, Gao J. Jiang C, et al. Among authors: chen py. Nat Commun. 2024 Jul 8;15(1):5718. doi: 10.1038/s41467-024-48069-8. Nat Commun. 2024. PMID: 38977665 Free PMC article.

5

Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors.

Sahoo B, Ali S, Chen PY, Patterson M, Zelikovsky A. Sahoo B, et al. Among authors: chen py. Biomolecules. 2023 Jun 2;13(6):934. doi: 10.3390/biom13060934. Biomolecules. 2023. PMID: 37371514 Free PMC article.

6

Improving Prediction Efficacy through Abnormality Detection and Data Preprocessing.

Tu CC, Chen PY, Wang N. Tu CC, et al. Among authors: chen py. IEEE Access. 2019;7:103794-103805. doi: 10.1109/access.2019.2930257. Epub 2019 Jul 22. IEEE Access. 2019. PMID: 33312834 Free PMC article.

7

Genome Architecture Mediates Transcriptional Control of Human Myogenic Reprogramming.

Liu S, Chen H, Ronquist S, Seaman L, Ceglia N, Meixner W, Chen PY, Higgins G, Baldi P, Smale S, Hero A, Muir LA, Rajapakse I. Liu S, et al. Among authors: chen py, chen h. iScience. 2018 Aug 31;6:232-246. doi: 10.1016/j.isci.2018.08.002. Epub 2018 Aug 8. iScience. 2018. PMID: 30240614 Free PMC article.

8

Editorial: Safe and Trustworthy Machine Learning.

Kailkhura B, Chen PY, Lin X, Li B. Kailkhura B, et al. Among authors: chen py. Front Big Data. 2021 Aug 6;4:731605. doi: 10.3389/fdata.2021.731605. eCollection 2021. Front Big Data. 2021. PMID: 34423287 Free PMC article. No abstract available.

9

Benchmarking machine learning robustness in Covid-19 genome sequence classification.

Ali S, Sahoo B, Zelikovsky A, Chen PY, Patterson M. Ali S, et al. Among authors: chen py. Sci Rep. 2023 Mar 13;13(1):4154. doi: 10.1038/s41598-023-31368-3. Sci Rep. 2023. PMID: 36914815 Free PMC article.

10

CURE: A deep learning framework pre-trained on large-scale patient data for treatment effect estimation.

Liu R, Chen PY, Zhang P. Liu R, et al. Among authors: chen py. Patterns (N Y). 2024 May 1;5(6):100973. doi: 10.1016/j.patter.2024.100973. eCollection 2024 Jun 14. Patterns (N Y). 2024. PMID: 39005483 Free PMC article.

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