Soneson C - Search Results

1

CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data.

Lütge A, Zyprych-Walczak J, Brykczynska Kunzmann U, Crowell HL, Calini D, Malhotra D, Soneson C, Robinson MD. Lütge A, et al. Among authors: soneson c. Life Sci Alliance. 2021 Mar 23;4(6):e202001004. doi: 10.26508/lsa.202001004. Print 2021 Jun. Life Sci Alliance. 2021. PMID: 33758076 Free PMC article.

2

A comparison of methods for differential expression analysis of RNA-seq data.

Soneson C, Delorenzi M. Soneson C, et al. BMC Bioinformatics. 2013 Mar 9;14:91. doi: 10.1186/1471-2105-14-91. BMC Bioinformatics. 2013. PMID: 23497356 Free PMC article.

3

compcodeR--an R package for benchmarking differential expression methods for RNA-seq data.

Soneson C. Soneson C. Bioinformatics. 2014 Sep 1;30(17):2517-8. doi: 10.1093/bioinformatics/btu324. Epub 2014 May 9. Bioinformatics. 2014. PMID: 24813215

4

Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage.

Soneson C, Matthes KL, Nowicka M, Law CW, Robinson MD. Soneson C, et al. Genome Biol. 2016 Jan 26;17:12. doi: 10.1186/s13059-015-0862-3. Genome Biol. 2016. PMID: 26813113 Free PMC article.

5

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences.

Soneson C, Love MI, Robinson MD. Soneson C, et al. F1000Res. 2015 Dec 30;4:1521. doi: 10.12688/f1000research.7563.2. eCollection 2015. F1000Res. 2015. PMID: 26925227 Free PMC article.

6

iCOBRA: open, reproducible, standardized and live method benchmarking.

Soneson C, Robinson MD. Soneson C, et al. Nat Methods. 2016 Apr;13(4):283. doi: 10.1038/nmeth.3805. Nat Methods. 2016. PMID: 27027585 Free article. No abstract available.

7

Faithful mRNA splicing depends on the Prp19 complex subunit faint sausage and is required for tracheal branching morphogenesis in Drosophila.

Sauerwald J, Soneson C, Robinson MD, Luschnig S. Sauerwald J, et al. Among authors: soneson c. Development. 2017 Feb 15;144(4):657-663. doi: 10.1242/dev.144535. Epub 2017 Jan 13. Development. 2017. PMID: 28087625 Free article.

8

stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage.

Van den Berge K, Soneson C, Robinson MD, Clement L. Van den Berge K, et al. Among authors: soneson c. Genome Biol. 2017 Aug 7;18(1):151. doi: 10.1186/s13059-017-1277-0. Genome Biol. 2017. PMID: 28784146 Free PMC article.

9

Towards unified quality verification of synthetic count data with countsimQC.

Soneson C, Robinson MD. Soneson C, et al. Bioinformatics. 2018 Feb 15;34(4):691-692. doi: 10.1093/bioinformatics/btx631. Bioinformatics. 2018. PMID: 29028961 Free PMC article.

10

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: soneson c. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

78 results

Search Page

Filters