Routh A - Search Results

1

Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.

Jaworski E, Langsjoen RM, Mitchell B, Judy B, Newman P, Plante JA, Plante KS, Miller AL, Zhou Y, Swetnam D, Sotcheff S, Morris V, Saada N, Machado R, McConnell A, Widen S, Thompson J, Dong J, Ren P, Pyles RB, Ksiazek T, Menachery VD, Weaver SC, Routh A. Jaworski E, et al. Among authors: routh a. bioRxiv [Preprint]. 2021 Sep 1:2021.03.10.434828. doi: 10.1101/2021.03.10.434828. bioRxiv. 2021. Update in: Elife. 2021 Sep 28;10:e68479. doi: 10.7554/eLife.68479 PMID: 33758846 Free PMC article. Updated. Preprint.

2

Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.

Routh A, Ji P, Jaworski E, Xia Z, Li W, Wagner EJ. Routh A, et al. Nucleic Acids Res. 2017 Jul 7;45(12):e112. doi: 10.1093/nar/gkx286. Nucleic Acids Res. 2017. PMID: 28449108 Free PMC article.

3

Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus.

Jaworski E, Routh A. Jaworski E, et al. Among authors: routh a. PLoS Pathog. 2017 May 5;13(5):e1006365. doi: 10.1371/journal.ppat.1006365. eCollection 2017 May. PLoS Pathog. 2017. PMID: 28475646 Free PMC article.

4

ClickSeq: Replacing Fragmentation and Enzymatic Ligation with Click-Chemistry to Prevent Sequence Chimeras.

Jaworski E, Routh A. Jaworski E, et al. Among authors: routh a. Methods Mol Biol. 2018;1712:71-85. doi: 10.1007/978-1-4939-7514-3_6. Methods Mol Biol. 2018. PMID: 29224069

5

Development of Poly(A)-ClickSeq as a tool enabling simultaneous genome-wide poly(A)-site identification and differential expression analysis.

Elrod ND, Jaworski EA, Ji P, Wagner EJ, Routh A. Elrod ND, et al. Among authors: routh a. Methods. 2019 Feb 15;155:20-29. doi: 10.1016/j.ymeth.2019.01.002. Epub 2019 Jan 6. Methods. 2019. PMID: 30625385 Free PMC article.

6

Dengue NS2A Protein Orchestrates Virus Assembly.

Xie X, Zou J, Zhang X, Zhou Y, Routh AL, Kang C, Popov VL, Chen X, Wang QY, Dong H, Shi PY. Xie X, et al. Cell Host Microbe. 2019 Nov 13;26(5):606-622.e8. doi: 10.1016/j.chom.2019.09.015. Epub 2019 Oct 17. Cell Host Microbe. 2019. PMID: 31631053 Free article.

7

Mapping RNA-capsid interactions and RNA secondary structure within virus particles using next-generation sequencing.

Zhou Y, Routh A. Zhou Y, et al. Among authors: routh a. Nucleic Acids Res. 2020 Jan 24;48(2):e12. doi: 10.1093/nar/gkz1124. Nucleic Acids Res. 2020. PMID: 31799606 Free PMC article.

8

Understanding Flavivirus Capsid Protein Functions: The Tip of the Iceberg.

Sotcheff S, Routh A. Sotcheff S, et al. Among authors: routh a. Pathogens. 2020 Jan 5;9(1):42. doi: 10.3390/pathogens9010042. Pathogens. 2020. PMID: 31948047 Free PMC article. Review.

9

A Low Fidelity Virus Shows Increased Recombination during the Removal of an Alphavirus Reporter Gene.

Kautz TF, Jaworski E, Routh A, Forrester NL. Kautz TF, et al. Among authors: routh a. Viruses. 2020 Jun 19;12(6):660. doi: 10.3390/v12060660. Viruses. 2020. PMID: 32575413 Free PMC article.

10

Differential Alphavirus Defective RNA Diversity between Intracellular and Extracellular Compartments Is Driven by Subgenomic Recombination Events.

Langsjoen RM, Muruato AE, Kunkel SR, Jaworski E, Routh A. Langsjoen RM, et al. Among authors: routh a. mBio. 2020 Aug 18;11(4):e00731-20. doi: 10.1128/mBio.00731-20. mBio. 2020. PMID: 32817101 Free PMC article.

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