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One-step Reprogramming of Human Fibroblasts into Oligodendrocyte-like Cells by SOX10, OLIG2, and NKX6.2.
Chanoumidou K, Hernández-Rodríguez B, Windener F, Thomas C, Stehling M, Mozafari S, Albrecht S, Ottoboni L, Antel J, Kim KP, Velychko S, Cui QL, Xu YKT, Martino G, Winkler J, Schöler HR, Baron-Van Evercooren A, Boespflug-Tanguy O, Vaquerizas JM, Ehrlich M, Kuhlmann T. Chanoumidou K, et al. Among authors: vaquerizas jm. Stem Cell Reports. 2021 Apr 13;16(4):771-783. doi: 10.1016/j.stemcr.2021.03.001. Epub 2021 Mar 25. Stem Cell Reports. 2021. PMID: 33770499 Free PMC article.
TADtool: visual parameter identification for TAD-calling algorithms.
Kruse K, Hug CB, Hernández-Rodríguez B, Vaquerizas JM. Kruse K, et al. Among authors: vaquerizas jm. Bioinformatics. 2016 Oct 15;32(20):3190-3192. doi: 10.1093/bioinformatics/btw368. Epub 2016 Jun 17. Bioinformatics. 2016. PMID: 27318199 Free PMC article.
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells.
Rhodes JDP, Feldmann A, Hernández-Rodríguez B, Díaz N, Brown JM, Fursova NA, Blackledge NP, Prathapan P, Dobrinic P, Huseyin MK, Szczurek A, Kruse K, Nasmyth KA, Buckle VJ, Vaquerizas JM, Klose RJ. Rhodes JDP, et al. Among authors: vaquerizas jm. Cell Rep. 2020 Jan 21;30(3):820-835.e10. doi: 10.1016/j.celrep.2019.12.057. Cell Rep. 2020. PMID: 31968256 Free PMC article.
Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.
D'Orazio FM, Balwierz PJ, González AJ, Guo Y, Hernández-Rodríguez B, Wheatley L, Jasiulewicz A, Hadzhiev Y, Vaquerizas JM, Cairns B, Lenhard B, Müller F. D'Orazio FM, et al. Among authors: vaquerizas jm. Dev Cell. 2021 Mar 8;56(5):641-656.e5. doi: 10.1016/j.devcel.2021.02.007. Epub 2021 Mar 1. Dev Cell. 2021. PMID: 33651978 Free PMC article.
Ronin governs the metabolic capacity of the embryonic lineage for post-implantation development.
Salewskij K, Gross-Thebing T, Ing-Simmons E, Duethorn B, Rieger B, Fan R, Chen R, Govindasamy N, Brinkmann H, Kremer L, Kuempel-Rink N, Mildner K, Zeuschner D, Stehling M, Dejosez M, Zwaka TP, Schöler HR, Busch KB, Vaquerizas JM, Bedzhov I. Salewskij K, et al. Among authors: vaquerizas jm. EMBO Rep. 2021 Nov 4;22(11):e53048. doi: 10.15252/embr.202153048. Epub 2021 Sep 13. EMBO Rep. 2021. PMID: 34515391 Free PMC article.
Early developmental plasticity enables the induction of an intermediate extraembryonic cell state.
Sathyanarayanan A, Ing-Simmons E, Chen R, Jeong HW, Ozguldez HO, Fan R, Duethorn B, Kim KP, Kim YS, Stehling M, Brinkmann H, Schöler HR, Adams RH, Vaquerizas JM, Bedzhov I. Sathyanarayanan A, et al. Among authors: vaquerizas jm. Sci Adv. 2022 Nov 4;8(44):eabl9583. doi: 10.1126/sciadv.abl9583. Epub 2022 Nov 4. Sci Adv. 2022. PMID: 36332016 Free PMC article.
Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolism.
Duethorn B, Groll F, Rieger B, Drexler HCA, Brinkmann H, Kremer L, Stehling M, Borowski MT, Mildner K, Zeuschner D, Zernicka-Goetz M, Stemmler MP, Busch KB, Vaquerizas JM, Bedzhov I. Duethorn B, et al. Among authors: vaquerizas jm. Nat Commun. 2022 Feb 1;13(1):610. doi: 10.1038/s41467-022-28139-5. Nat Commun. 2022. PMID: 35105859 Free PMC article.
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic D, Hörtenhuber M, Balwierz PJ, Zehnder T, Mukarram AK, Nepal C, Várnai C, Hadzhiev Y, Jimenez-Gonzalez A, Li N, Wragg J, D'Orazio FM, Relic D, Pachkov M, Díaz N, Hernández-Rodríguez B, Chen Z, Stoiber M, Dong M, Stevens I, Ross SE, Eagle A, Martin R, Obasaju O, Rastegar S, McGarvey AC, Kopp W, Chambers E, Wang D, Kim HR, Acemel RD, Naranjo S, Łapiński M, Chong V, Mathavan S, Peers B, Sauka-Spengler T, Vingron M, Carninci P, Ohler U, Lacadie SA, Burgess SM, Winata C, van Eeden F, Vaquerizas JM, Gómez-Skarmeta JL, Onichtchouk D, Brown BJ, Bogdanovic O, van Nimwegen E, Westerfield M, Wardle FC, Daub CO, Lenhard B, Müller F. Baranasic D, et al. Among authors: vaquerizas jm. Nat Genet. 2022 Jul;54(7):1037-1050. doi: 10.1038/s41588-022-01089-w. Epub 2022 Jul 4. Nat Genet. 2022. PMID: 35789323 Free PMC article.
The Transition from Quiescent to Activated States in Human Hematopoietic Stem Cells Is Governed by Dynamic 3D Genome Reorganization.
Takayama N, Murison A, Takayanagi SI, Arlidge C, Zhou S, Garcia-Prat L, Chan-Seng-Yue M, Zandi S, Gan OI, Boutzen H, Kaufmann KB, Trotman-Grant A, Schoof E, Kron K, Díaz N, Lee JJY, Medina T, De Carvalho DD, Taylor MD, Vaquerizas JM, Xie SZ, Dick JE, Lupien M. Takayama N, et al. Among authors: vaquerizas jm. Cell Stem Cell. 2021 Mar 4;28(3):488-501.e10. doi: 10.1016/j.stem.2020.11.001. Epub 2020 Nov 25. Cell Stem Cell. 2021. PMID: 33242413 Free article.
69 results