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A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches.
Bogaerts B, Delcourt T, Soetaert K, Boarbi S, Ceyssens PJ, Winand R, Van Braekel J, De Keersmaecker SCJ, Roosens NHC, Marchal K, Mathys V, Vanneste K. Bogaerts B, et al. Among authors: vanneste k. J Clin Microbiol. 2021 May 19;59(6):e00202-21. doi: 10.1128/JCM.00202-21. Print 2021 May 19. J Clin Microbiol. 2021. PMID: 33789960 Free PMC article.
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
Bogaerts B, Winand R, Fu Q, Van Braekel J, Ceyssens PJ, Mattheus W, Bertrand S, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Among authors: vanneste k. Front Microbiol. 2019 Mar 6;10:362. doi: 10.3389/fmicb.2019.00362. eCollection 2019. Front Microbiol. 2019. PMID: 30894839 Free PMC article.
Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the mcr-1 Gene, Isolated from Seawater of the Algiers Coast in Algeria.
Berrazeg M, Deriet A, De Keersmaecker SCJ, Verhaegen B, Vanneste K, Botteldoorn N, Roosens NHC, Mouffok F, Drali R. Berrazeg M, et al. Among authors: vanneste k. Microbiol Resour Announc. 2019 Aug 22;8(34):e00638-19. doi: 10.1128/MRA.00638-19. Microbiol Resour Announc. 2019. PMID: 31439693 Free PMC article.
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES.
Winand R, Bogaerts B, Hoffman S, Lefevre L, Delvoye M, Braekel JV, Fu Q, Roosens NH, Keersmaecker SC, Vanneste K. Winand R, et al. Among authors: vanneste k. Int J Mol Sci. 2019 Dec 31;21(1):298. doi: 10.3390/ijms21010298. Int J Mol Sci. 2019. PMID: 31906254 Free PMC article.
90 results