Zhang P - Search Results

1

Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif.

Zhang P, Han J, Cieplak P, Cheung MS. Zhang P, et al. J Chem Phys. 2021 Mar 28;154(12):124104. doi: 10.1063/5.0037517. J Chem Phys. 2021. PMID: 33810667 Free PMC article.

2

Protein recognition and selection through conformational and mutually induced fit.

Wang Q, Zhang P, Hoffman L, Tripathi S, Homouz D, Liu Y, Waxham MN, Cheung MS. Wang Q, et al. Among authors: zhang p. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20545-50. doi: 10.1073/pnas.1312788110. Epub 2013 Dec 2. Proc Natl Acad Sci U S A. 2013. PMID: 24297894 Free PMC article.

3

Conformational frustration in calmodulin-target recognition.

Tripathi S, Wang Q, Zhang P, Hoffman L, Waxham MN, Cheung MS. Tripathi S, et al. Among authors: zhang p. J Mol Recognit. 2015 Feb;28(2):74-86. doi: 10.1002/jmr.2413. Epub 2015 Jan 20. J Mol Recognit. 2015. PMID: 25622562 Free PMC article.

4

Opposing Intermolecular Tuning of Ca²⁺ Affinity for Calmodulin by Neurogranin and CaMKII Peptides.

Zhang P, Tripathi S, Trinh H, Cheung MS. Zhang P, et al. Biophys J. 2017 Mar 28;112(6):1105-1119. doi: 10.1016/j.bpj.2017.01.020. Biophys J. 2017. PMID: 28355539 Free PMC article.

5

Induced polarization restricts the conformational distribution of a light-harvesting molecular triad in the ground state.

Starovoytov ON, Zhang P, Cieplak P, Cheung MS. Starovoytov ON, et al. Among authors: zhang p. Phys Chem Chem Phys. 2017 Aug 30;19(34):22969-22980. doi: 10.1039/c7cp03177g. Phys Chem Chem Phys. 2017. PMID: 28815237

6

Molecular Dynamics Ensemble Refinement of Intrinsically Disordered Peptides According to Deconvoluted Spectra from Circular Dichroism.

Ezerski JC, Zhang P, Jennings NC, Waxham MN, Cheung MS. Ezerski JC, et al. Among authors: zhang p. Biophys J. 2020 Apr 7;118(7):1665-1678. doi: 10.1016/j.bpj.2020.02.015. Epub 2020 Feb 25. Biophys J. 2020. PMID: 32145192 Free PMC article.

7

On the Interplay between Electronic Structure and Polarizable Force Fields When Calculating Solution-Phase Charge-Transfer Rates.

Han J, Zhang P, Aksu H, Maiti B, Sun X, Geva E, Dunietz BD, Cheung MS. Han J, et al. Among authors: zhang p. J Chem Theory Comput. 2020 Oct 13;16(10):6481-6490. doi: 10.1021/acs.jctc.0c00796. Epub 2020 Sep 30. J Chem Theory Comput. 2020. PMID: 32997944

8

CTRAMER: An open-source software package for correlating interfacial charge transfer rate constants with donor/acceptor geometries in organic photovoltaic materials.

Tinnin J, Aksu H, Tong Z, Zhang P, Geva E, Dunietz BD, Sun X, Cheung MS. Tinnin J, et al. Among authors: zhang p. J Chem Phys. 2021 Jun 7;154(21):214108. doi: 10.1063/5.0050574. J Chem Phys. 2021. PMID: 34240998

9

Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca²⁺-Calmodulin.

Nde J, Zhang P, Ezerski JC, Lu W, Knapp K, Wolynes PG, Cheung MS. Nde J, et al. Among authors: zhang p. Front Mol Biosci. 2021 Aug 24;8:661322. doi: 10.3389/fmolb.2021.661322. eCollection 2021. Front Mol Biosci. 2021. PMID: 34504868 Free PMC article.

10

Correlating Interfacial Charge Transfer Rates with Interfacial Molecular Structure in the Tetraphenyldibenzoperiflanthene/C₇₀ Organic Photovoltaic System.

Tinnin J, Bhandari S, Zhang P, Geva E, Dunietz BD, Sun X, Cheung MS. Tinnin J, et al. Among authors: zhang p. J Phys Chem Lett. 2022 Jan 27;13(3):763-769. doi: 10.1021/acs.jpclett.1c03618. Epub 2022 Jan 18. J Phys Chem Lett. 2022. PMID: 35040657

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