da Silveira WA - Search Results

1

NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data.

Overbey EG, Saravia-Butler AM, Zhang Z, Rathi KS, Fogle H, da Silveira WA, Barker RJ, Bass JJ, Beheshti A, Berrios DC, Blaber EA, Cekanaviciute E, Costa HA, Davin LB, Fisch KM, Gebre SG, Geniza M, Gilbert R, Gilroy S, Hardiman G, Herranz R, Kidane YH, Kruse CPS, Lee MD, Liefeld T, Lewis NG, McDonald JT, Meller R, Mishra T, Perera IY, Ray S, Reinsch SS, Rosenthal SB, Strong M, Szewczyk NJ, Tahimic CGT, Taylor DM, Vandenbrink JP, Villacampa A, Weging S, Wolverton C, Wyatt SE, Zea L, Costes SV, Galazka JM. Overbey EG, et al. Among authors: da silveira wa. iScience. 2021 Mar 26;24(4):102361. doi: 10.1016/j.isci.2021.102361. eCollection 2021 Apr 23. iScience. 2021. PMID: 33870146 Free PMC article.

2

Genomics pipelines and data integration: challenges and opportunities in the research setting.

Davis-Turak J, Courtney SM, Hazard ES, Glen WB Jr, da Silveira WA, Wesselman T, Harbin LP, Wolf BJ, Chung D, Hardiman G. Davis-Turak J, et al. Among authors: da silveira wa. Expert Rev Mol Diagn. 2017 Mar;17(3):225-237. doi: 10.1080/14737159.2017.1282822. Epub 2017 Jan 25. Expert Rev Mol Diagn. 2017. PMID: 28092471 Free PMC article. Review.

3

Semi-supervised identification of cancer subgroups using survival outcomes and overlapping grouping information.

Wei W, Sun Z, da Silveira WA, Yu Z, Lawson A, Hardiman G, Kelemen LE, Chung D. Wei W, et al. Among authors: da silveira wa. Stat Methods Med Res. 2019 Jul;28(7):2137-2149. doi: 10.1177/0962280217752980. Epub 2018 Jan 16. Stat Methods Med Res. 2019. PMID: 29336210 Free PMC article.

4

Systems Analysis of the Liver Transcriptome in Adult Male Zebrafish Exposed to the Plasticizer (2-Ethylhexyl) Phthalate (DEHP).

Huff M, da Silveira WA, Carnevali O, Renaud L, Hardiman G. Huff M, et al. Among authors: da silveira wa. Sci Rep. 2018 Feb 1;8(1):2118. doi: 10.1038/s41598-018-20266-8. Sci Rep. 2018. PMID: 29391432 Free PMC article.

5

miRmapper: A Tool for Interpretation of miRNA⁻mRNA Interaction Networks.

da Silveira WA, Renaud L, Simpson J, Glen WB Jr, Hazard ES, Chung D, Hardiman G. da Silveira WA, et al. Genes (Basel). 2018 Sep 14;9(9):458. doi: 10.3390/genes9090458. Genes (Basel). 2018. PMID: 30223528 Free PMC article.

6

Systems analysis of the liver transcriptome in adult male zebrafish exposed to the non-ionic surfactant nonylphenol.

Huff M, da Silveira W, Starr Hazard E, Courtney SM, Renaud L, Hardiman G. Huff M, et al. Gen Comp Endocrinol. 2019 Jan 15;271:1-14. doi: 10.1016/j.ygcen.2018.10.016. Epub 2018 Oct 25. Gen Comp Endocrinol. 2019. PMID: 30563618

7

Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: Overview of Library Preparation Methods.

Courtney SM, da Silveira WA, Hazard ES, Hardiman G. Courtney SM, et al. Among authors: da silveira wa. Methods Mol Biol. 2019;1908:169-184. doi: 10.1007/978-1-4939-9004-7_12. Methods Mol Biol. 2019. PMID: 30649728

8

Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: From Raw Data to Systems Level Analyses.

da Silveira WA, Hazard ES, Chung D, Hardiman G. da Silveira WA, et al. Methods Mol Biol. 2019;1908:185-204. doi: 10.1007/978-1-4939-9004-7_13. Methods Mol Biol. 2019. PMID: 30649729

9

GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature.

Couch D, Yu Z, Nam JH, Allen C, Ramos PS, da Silveira WA, Hunt KJ, Hazard ES, Hardiman G, Lawson A, Chung D. Couch D, et al. Among authors: da silveira wa. PLoS One. 2019 Jul 1;14(7):e0219195. doi: 10.1371/journal.pone.0219195. eCollection 2019. PLoS One. 2019. PMID: 31260503 Free PMC article.

10

Mice Exposed to Combined Chronic Low-Dose Irradiation and Modeled Microgravity Develop Long-Term Neurological Sequelae.

Overbey EG, Paul AM, da Silveira WA, Tahimic CGT, Reinsch SS, Szewczyk N, Stanbouly S, Wang C, Galazka JM, Mao XW. Overbey EG, et al. Among authors: da silveira wa. Int J Mol Sci. 2019 Aug 22;20(17):4094. doi: 10.3390/ijms20174094. Int J Mol Sci. 2019. PMID: 31443374 Free PMC article.

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