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Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".
Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Vangay P, et al. Among authors: chain p. mSystems. 2021 May 4;6(3):e00273-21. doi: 10.1128/mSystems.00273-21. mSystems. 2021. PMID: 33947809 Free PMC article. No abstract available.
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Vangay P, et al. Among authors: chain p. mSystems. 2021 Feb 23;6(1):e01194-20. doi: 10.1128/mSystems.01194-20. mSystems. 2021. PMID: 33622857 Free PMC article.
Molecular Dissection of Induced Platinum Resistance through Functional and Gene Expression Analysis in a Cell Culture Model of Bladder Cancer.
Wang S, Zhang H, Scharadin TM, Zimmermann M, Hu B, Pan AW, Vinall R, Lin TY, Cimino G, Chain P, Vuyisich M, Gleasner C, Mcmurry K, Malfatti M, Turteltaub K, de Vere White R, Pan CX, Henderson PT. Wang S, et al. Among authors: chain p. PLoS One. 2016 Jan 22;11(1):e0146256. doi: 10.1371/journal.pone.0146256. eCollection 2016. PLoS One. 2016. PMID: 26799320 Free PMC article.
Bacterial genome annotation.
Beckloff N, Starkenburg S, Freitas T, Chain P. Beckloff N, et al. Among authors: chain p. Methods Mol Biol. 2012;881:471-503. doi: 10.1007/978-1-61779-827-6_16. Methods Mol Biol. 2012. PMID: 22639223
Artificial polyploidy improves bacterial single cell genome recovery.
Dichosa AE, Fitzsimons MS, Lo CC, Weston LL, Preteska LG, Snook JP, Zhang X, Gu W, McMurry K, Green LD, Chain PS, Detter JC, Han CS. Dichosa AE, et al. Among authors: chain ps. PLoS One. 2012;7(5):e37387. doi: 10.1371/journal.pone.0037387. Epub 2012 May 22. PLoS One. 2012. PMID: 22666352 Free PMC article.
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.
Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS. Fitzsimons MS, et al. Among authors: chain ps. Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14. Genome Res. 2013. PMID: 23493677 Free PMC article.
Facile, high quality sequencing of bacterial genomes from small amounts of DNA.
Vuyisich M, Arefin A, Davenport K, Feng S, Gleasner C, McMurry K, Parson-Quintana B, Price J, Scholz M, Chain P. Vuyisich M, et al. Among authors: chain p. Int J Genomics. 2014;2014:434575. doi: 10.1155/2014/434575. Epub 2014 Nov 13. Int J Genomics. 2014. PMID: 25478564 Free PMC article.
Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.
Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS. Johnson SL, et al. Genome Announc. 2015 Apr 30;3(2):e00148-15. doi: 10.1128/genomeA.00148-15. Genome Announc. 2015. PMID: 25931590 Free PMC article.
Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.
Filippidou S, Jaussi M, Junier T, Wunderlin T, Roussel-Delif L, Jeanneret N, Vieth-Hillebrand A, Vetter A, Regenspurg S, Johnson SL, McMurry K, Gleasner CD, Lo CC, Li P, Vuyisich M, Chain PS, Junier P. Filippidou S, et al. Among authors: chain ps. Genome Announc. 2015 Jun 11;3(3):e00575-15. doi: 10.1128/genomeA.00575-15. Genome Announc. 2015. PMID: 26067952 Free PMC article.
312 results