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Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes.
Gerbin KA, Grancharova T, Donovan-Maiye RM, Hendershott MC, Anderson HG, Brown JM, Chen J, Dinh SQ, Gehring JL, Johnson GR, Lee H, Nath A, Nelson AM, Sluzewski MF, Viana MP, Yan C, Zaunbrecher RJ, Cordes Metzler KR, Gaudreault N, Knijnenburg TA, Rafelski SM, Theriot JA, Gunawardane RN. Gerbin KA, et al. Among authors: theriot ja. Cell Syst. 2021 Jun 16;12(6):670-687.e10. doi: 10.1016/j.cels.2021.05.001. Epub 2021 May 26. Cell Syst. 2021. PMID: 34043964 Free article.
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes.
Grancharova T, Gerbin KA, Rosenberg AB, Roco CM, Arakaki JE, DeLizo CM, Dinh SQ, Donovan-Maiye RM, Hirano M, Nelson AM, Tang J, Theriot JA, Yan C, Menon V, Palecek SP, Seelig G, Gunawardane RN. Grancharova T, et al. Among authors: theriot ja. Sci Rep. 2021 Aug 4;11(1):15845. doi: 10.1038/s41598-021-94732-1. Sci Rep. 2021. PMID: 34349150 Free PMC article.
A deep generative model of 3D single-cell organization.
Donovan-Maiye RM, Brown JM, Chan CK, Ding L, Yan C, Gaudreault N, Theriot JA, Maleckar MM, Knijnenburg TA, Johnson GR. Donovan-Maiye RM, et al. Among authors: theriot ja. PLoS Comput Biol. 2022 Jan 18;18(1):e1009155. doi: 10.1371/journal.pcbi.1009155. eCollection 2022 Jan. PLoS Comput Biol. 2022. PMID: 35041651 Free PMC article.
Colony context and size-dependent compensation mechanisms give rise to variations in nuclear growth trajectories.
Dixon JC, Frick CL, Leveille CL, Garrison P, Lee PA, Mogre SS, Morris B, Nivedita N, Vasan R, Chen J, Fraser CL, Gamlin CR, Harris LK, Hendershott MC, Johnson GT, Klein KN, Oluoch SA, Thirstrup DJ, Sluzewski MF, Wilhelm L, Yang R, Toloudis DM, Viana MP, Theriot JA, Rafelski SM. Dixon JC, et al. Among authors: theriot ja. bioRxiv [Preprint]. 2024 Jun 30:2024.06.28.601071. doi: 10.1101/2024.06.28.601071. bioRxiv. 2024. PMID: 38979140 Free PMC article. Preprint.
169 results