Xu Y - Search Results

1

An effective method to resolve ambiguous bisulfite-treated reads.

Liu M, Xu Y. Liu M, et al. Among authors: xu y. BMC Bioinformatics. 2021 May 27;22(1):283. doi: 10.1186/s12859-021-04204-6. BMC Bioinformatics. 2021. PMID: 34044763 Free PMC article.

2

MBA: a literature mining system for extracting biomedical abbreviations.

Xu Y, Wang Z, Lei Y, Zhao Y, Xue Y. Xu Y, et al. BMC Bioinformatics. 2009 Jan 9;10:14. doi: 10.1186/1471-2105-10-14. BMC Bioinformatics. 2009. PMID: 19134199 Free PMC article.

3

WinHAP2: an extremely fast haplotype phasing program for long genotype sequences.

Pan W, Zhao Y, Xu Y, Zhou F. Pan W, et al. Among authors: xu y. BMC Bioinformatics. 2014 May 30;15:164. doi: 10.1186/1471-2105-15-164. BMC Bioinformatics. 2014. PMID: 24884701 Free PMC article.

4

BitMapper: an efficient all-mapper based on bit-vector computing.

Cheng H, Jiang H, Yang J, Xu Y, Shang Y. Cheng H, et al. Among authors: xu y. BMC Bioinformatics. 2015 Jun 11;16:192. doi: 10.1186/s12859-015-0626-9. BMC Bioinformatics. 2015. PMID: 26063651 Free PMC article.

5

MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.

Pan W, Chen B, Xu Y. Pan W, et al. Among authors: xu y. Interdiscip Sci. 2015 Dec;7(4):405-13. doi: 10.1007/s12539-015-0281-x. Epub 2015 Aug 21. Interdiscip Sci. 2015. PMID: 26293485

6

FMtree: a fast locating algorithm of FM-indexes for genomic data.

Cheng H, Wu M, Xu Y. Cheng H, et al. Among authors: xu y. Bioinformatics. 2018 Feb 1;34(3):416-424. doi: 10.1093/bioinformatics/btx596. Bioinformatics. 2018. PMID: 28968761

7

Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.

Chen S, Zhou Y, Chen Y, Huang T, Liao W, Xu Y, Li Z, Gu J. Chen S, et al. Among authors: xu y. BMC Bioinformatics. 2019 Dec 27;20(Suppl 23):606. doi: 10.1186/s12859-019-3280-9. BMC Bioinformatics. 2019. PMID: 31881822 Free PMC article.

8

A novel fast multiple nucleotide sequence alignment method based on FM-index.

Liu H, Zou Q, Xu Y. Liu H, et al. Among authors: xu y. Brief Bioinform. 2022 Jan 17;23(1):bbab519. doi: 10.1093/bib/bbab519. Brief Bioinform. 2022. PMID: 34893794

9

DNA sequences alignment method using sparse index on pan-genome graph.

Gao J, Xu Y. Gao J, et al. Among authors: xu y. J Bioinform Comput Biol. 2024 Aug;22(4):2450019. doi: 10.1142/S0219720024500197. Epub 2024 Aug 31. J Bioinform Comput Biol. 2024. PMID: 39215522

10

Estimate haplotype frequencies in pedigrees.

Zhang Q, Zhao Y, Chen G, Xu Y. Zhang Q, et al. Among authors: xu y. BMC Bioinformatics. 2006 Dec 12;7 Suppl 4(Suppl 4):S5. doi: 10.1186/1471-2105-7-S4-S5. BMC Bioinformatics. 2006. PMID: 17217523 Free PMC article.

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