Harris LA - Search Results

1

Unsupervised logic-based mechanism inference for network-driven biological processes.

Prugger M, Einkemmer L, Beik SP, Wasdin PT, Harris LA, Lopez CF. Prugger M, et al. Among authors: harris la. PLoS Comput Biol. 2021 Jun 2;17(6):e1009035. doi: 10.1371/journal.pcbi.1009035. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34077417 Free PMC article.

2

Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS. Chylek LA, et al. Among authors: harris la. Wiley Interdiscip Rev Syst Biol Med. 2014 Jan-Feb;6(1):13-36. doi: 10.1002/wsbm.1245. Epub 2013 Sep 30. Wiley Interdiscip Rev Syst Biol Med. 2014. PMID: 24123887 Free PMC article. Review.

3

An unbiased metric of antiproliferative drug effect in vitro.

Harris LA, Frick PL, Garbett SP, Hardeman KN, Paudel BB, Lopez CF, Quaranta V, Tyson DR. Harris LA, et al. Nat Methods. 2016 Jun;13(6):497-500. doi: 10.1038/nmeth.3852. Epub 2016 May 2. Nat Methods. 2016. PMID: 27135974 Free PMC article.

4

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Chifman J, Arat S, Deng Z, Lemler E, Pino JC, Harris LA, Kochen MA, Lopez CF, Akman SA, Torti FM, Torti SV, Laubenbacher R. Chifman J, et al. Among authors: harris la. PLoS Comput Biol. 2017 Feb 6;13(2):e1005352. doi: 10.1371/journal.pcbi.1005352. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28166223 Free PMC article.

5

GPU-powered model analysis with PySB/cupSODA.

Harris LA, Nobile MS, Pino JC, Lubbock ALR, Besozzi D, Mauri G, Cazzaniga P, Lopez CF. Harris LA, et al. Bioinformatics. 2017 Nov 1;33(21):3492-3494. doi: 10.1093/bioinformatics/btx420. Bioinformatics. 2017. PMID: 28666314 Free PMC article.

6

Modeling heterogeneous tumor growth dynamics and cell-cell interactions at single-cell and cell-population resolution.

Harris LA, Beik S, Ozawa PMM, Jimenez L, Weaver AM. Harris LA, et al. Curr Opin Syst Biol. 2019 Oct;17:24-34. doi: 10.1016/j.coisb.2019.09.005. Epub 2019 Sep 16. Curr Opin Syst Biol. 2019. PMID: 32642602 Free PMC article.

7

Thunor: visualization and analysis of high-throughput dose-response datasets.

Lubbock ALR, Harris LA, Quaranta V, Tyson DR, Lopez CF. Lubbock ALR, et al. Among authors: harris la. Nucleic Acids Res. 2021 Jul 2;49(W1):W633-W640. doi: 10.1093/nar/gkab424. Nucleic Acids Res. 2021. PMID: 34038546 Free PMC article.

8

Processes in DNA damage response from a whole-cell multi-omics perspective.

Pino JC, Lubbock ALR, Harris LA, Gutierrez DB, Farrow MA, Muszynski N, Tsui T, Sherrod SD, Norris JL, McLean JA, Caprioli RM, Wikswo JP, Lopez CF. Pino JC, et al. Among authors: harris la. iScience. 2022 Oct 19;25(11):105341. doi: 10.1016/j.isci.2022.105341. eCollection 2022 Nov 18. iScience. 2022. PMID: 36339253 Free PMC article.

9

A biochemical necroptosis model explains cell-type-specific responses to cell death cues.

Ildefonso GV, Oliver Metzig M, Hoffmann A, Harris LA, Lopez CF. Ildefonso GV, et al. Among authors: harris la. Biophys J. 2023 Mar 7;122(5):817-834. doi: 10.1016/j.bpj.2023.01.035. Epub 2023 Jan 28. Biophys J. 2023. PMID: 36710493 Free PMC article.

10

Unified tumor growth mechanisms from multimodel inference and dataset integration.

Beik SP, Harris LA, Kochen MA, Sage J, Quaranta V, Lopez CF. Beik SP, et al. Among authors: harris la. PLoS Comput Biol. 2023 Jul 5;19(7):e1011215. doi: 10.1371/journal.pcbi.1011215. eCollection 2023 Jul. PLoS Comput Biol. 2023. PMID: 37406008 Free PMC article.

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