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A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence.
Assis RAB, Varani AM, Sagawa CHD, Patané JSL, Setubal JC, Uceda-Campos G, da Silva AM, Zaini PA, Almeida NF, Moreira LM, Dandekar AM. Assis RAB, et al. Among authors: setubal jc. Genomics. 2021 Jul;113(4):2513-2525. doi: 10.1016/j.ygeno.2021.06.003. Epub 2021 Jun 3. Genomics. 2021. PMID: 34089784 Free article.
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP. da Silva AC, et al. Among authors: setubal jc. Nature. 2002 May 23;417(6887):459-63. doi: 10.1038/417459a. Nature. 2002. PMID: 12024217
Comparative genomics analyses of citrus-associated bacteria.
Moreira LM, de Souza RF, Almeida NF Jr, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Moreira LM, et al. Among authors: setubal jc. Annu Rev Phytopathol. 2004;42:163-84. doi: 10.1146/annurev.phyto.42.040803.140310. Annu Rev Phytopathol. 2004. PMID: 15283664 Review.
Bacterial phytopathogens and genome science.
Setubal JC, Moreira LM, da Silva AC. Setubal JC, et al. Curr Opin Microbiol. 2005 Oct;8(5):595-600. doi: 10.1016/j.mib.2005.08.015. Curr Opin Microbiol. 2005. PMID: 16125997 Review.
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000.
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, Collmer A, Setubal JC, Vinatzer BA. Almeida NF, et al. Among authors: setubal jc. Mol Plant Microbe Interact. 2009 Jan;22(1):52-62. doi: 10.1094/MPMI-22-1-0052. Mol Plant Microbe Interact. 2009. PMID: 19061402 Free article.
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii.
Moreira LM, Almeida NF Jr, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, Gimenez DF, Jones JB, Kitajima EW, Laia ML, Leite RP Jr, Nishiyama MY, Rodrigues Neto J, Nociti LA, Norman DJ, Ostroski EH, Pereira HA Jr, Staskawicz BJ, Tezza RI, Ferro JA, Vinatzer BA, Setubal JC. Moreira LM, et al. Among authors: setubal jc. BMC Genomics. 2010 Apr 13;11:238. doi: 10.1186/1471-2164-11-238. BMC Genomics. 2010. PMID: 20388224 Free PMC article.
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.
Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB. Potnis N, et al. Among authors: setubal jc. BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/1471-2164-12-146. BMC Genomics. 2011. PMID: 21396108 Free PMC article.
The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity.
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, Zaccardelli M, Setubal JC, Morales-Lizcano NP, Bernal A, Coaker G, Baker C, Bender CL, Leman S, Vinatzer BA. Cai R, et al. Among authors: setubal jc. PLoS Pathog. 2011 Aug;7(8):e1002130. doi: 10.1371/journal.ppat.1002130. Epub 2011 Aug 25. PLoS Pathog. 2011. PMID: 21901088 Free PMC article.
Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway.
Wattam AR, Inzana TJ, Williams KP, Mane SP, Shukla M, Almeida NF, Dickerman AW, Mason S, Moriyón I, O'Callaghan D, Whatmore AM, Sobral BW, Tiller RV, Hoffmaster AR, Frace MA, De Castro C, Molinaro A, Boyle SM, De BK, Setubal JC. Wattam AR, et al. Among authors: setubal jc. mBio. 2012 Nov 6;3(5):e00246-11. doi: 10.1128/mBio.00388-12. mBio. 2012. PMID: 23131829 Free PMC article.
171 results