Akiyama BM - Search Results

1

Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication.

Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Akiyama BM, et al. Nucleic Acids Res. 2021 Jul 9;49(12):7122-7138. doi: 10.1093/nar/gkab462. Nucleic Acids Res. 2021. PMID: 34133732 Free PMC article.

2

The telomerase essential N-terminal domain promotes DNA synthesis by stabilizing short RNA-DNA hybrids.

Akiyama BM, Parks JW, Stone MD. Akiyama BM, et al. Nucleic Acids Res. 2015 Jun 23;43(11):5537-49. doi: 10.1093/nar/gkv406. Epub 2015 May 4. Nucleic Acids Res. 2015. PMID: 25940626 Free PMC article.

3

Structured RNAs that evade or confound exonucleases: function follows form.

Akiyama BM, Eiler D, Kieft JS. Akiyama BM, et al. Curr Opin Struct Biol. 2016 Feb;36:40-7. doi: 10.1016/j.sbi.2015.12.006. Epub 2016 Jan 12. Curr Opin Struct Biol. 2016. PMID: 26797676 Free PMC article. Review.

4

Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease.

Akiyama BM, Laurence HM, Massey AR, Costantino DA, Xie X, Yang Y, Shi PY, Nix JC, Beckham JD, Kieft JS. Akiyama BM, et al. Science. 2016 Dec 2;354(6316):1148-1152. doi: 10.1126/science.aah3963. Epub 2016 Nov 10. Science. 2016. PMID: 27934765 Free PMC article.

5

A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure.

Steckelberg AL, Akiyama BM, Costantino DA, Sit TL, Nix JC, Kieft JS. Steckelberg AL, et al. Among authors: akiyama bm. Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6404-6409. doi: 10.1073/pnas.1802429115. Epub 2018 Jun 4. Proc Natl Acad Sci U S A. 2018. PMID: 29866852 Free PMC article.

6

Different tertiary interactions create the same important 3D features in a distinct flavivirus xrRNA.

Jones RA, Steckelberg AL, Vicens Q, Szucs MJ, Akiyama BM, Kieft JS. Jones RA, et al. Among authors: akiyama bm. RNA. 2021 Jan;27(1):54-65. doi: 10.1261/rna.077065.120. Epub 2020 Oct 1. RNA. 2021. PMID: 33004436 Free PMC article.

7

Disruption of Zika Virus xrRNA1-Dependent sfRNA1 Production Results in Tissue-Specific Attenuated Viral Replication.

Sparks H, Monogue B, Akiyama B, Kieft J, Beckham JD. Sparks H, et al. Viruses. 2020 Oct 18;12(10):1177. doi: 10.3390/v12101177. Viruses. 2020. PMID: 33080971 Free PMC article.

8

Zika virus dumbbell-1 structure is critical for sfRNA presence and cytopathic effect during infection.

Graham ME, Merrick C, Akiyama BM, Szucs MJ, Leach S, Kieft JS, Beckham JD. Graham ME, et al. Among authors: akiyama bm. mBio. 2023 Aug 31;14(4):e0110823. doi: 10.1128/mbio.01108-23. Epub 2023 Jul 7. mBio. 2023. PMID: 37417764 Free PMC article.

9

Structural basis of template-boundary definition in Tetrahymena telomerase.

Jansson LI, Akiyama BM, Ooms A, Lu C, Rubin SM, Stone MD. Jansson LI, et al. Among authors: akiyama bm. Nat Struct Mol Biol. 2015 Nov;22(11):883-8. doi: 10.1038/nsmb.3101. Epub 2015 Oct 5. Nat Struct Mol Biol. 2015. PMID: 26436828 Free PMC article.

10

The RNA accordion model for template positioning by telomerase RNA during telomeric DNA synthesis.

Berman AJ, Akiyama BM, Stone MD, Cech TR. Berman AJ, et al. Among authors: akiyama bm. Nat Struct Mol Biol. 2011 Nov 20;18(12):1371-5. doi: 10.1038/nsmb.2174. Nat Struct Mol Biol. 2011. PMID: 22101935 Free PMC article.

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