Klingeman DM - Search Results

1

Cultivating the Bacterial Microbiota of Populus Roots.

Carper DL, Weston DJ, Barde A, Timm CM, Lu TY, Burdick LH, Jawdy SS, Klingeman DM, Robeson MS 2nd, Veach AM, Cregger MA, Kalluri UC, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Carper DL, et al. Among authors: klingeman dm. mSystems. 2021 Jun 29;6(3):e0130620. doi: 10.1128/mSystems.01306-20. Epub 2021 Jun 22. mSystems. 2021. PMID: 34156297 Free PMC article.

2

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae.

Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, Guo HB, Smith JC, Brown SD. Yang S, et al. Among authors: klingeman dm. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10395-400. doi: 10.1073/pnas.0914506107. Epub 2010 May 19. Proc Natl Acad Sci U S A. 2010. PMID: 20484677 Free PMC article.

3

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Brown SD, et al. Among authors: klingeman dm. J Bacteriol. 2012 May;194(9):2383-4. doi: 10.1128/JB.00198-12. J Bacteriol. 2012. PMID: 22493196 Free PMC article.

4

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA. Brown SD, et al. Among authors: klingeman dm. J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12. J Bacteriol. 2012. PMID: 22933770 Free PMC article.

5

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. Brown SD, et al. Among authors: klingeman dm. J Bacteriol. 2012 Nov;194(21):5991-3. doi: 10.1128/JB.01243-12. J Bacteriol. 2012. PMID: 23045501 Free PMC article.

6

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.

Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD. Utturkar SM, et al. Among authors: klingeman dm. Bioinformatics. 2014 Oct;30(19):2709-16. doi: 10.1093/bioinformatics/btu391. Epub 2014 Jun 14. Bioinformatics. 2014. PMID: 24930142 Free PMC article.

7

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.

Klingeman DM, Utturkar S, Lu TY, Schadt CW, Pelletier DA, Brown SD. Klingeman DM, et al. Genome Announc. 2015 Nov 12;3(6):e01344-15. doi: 10.1128/genomeA.01344-15. Genome Announc. 2015. PMID: 26564053 Free PMC article.

8

Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets.

Manga P, Klingeman DM, Lu TY, Mehlhorn TL, Pelletier DA, Hauser LJ, Wilson CM, Brown SD. Manga P, et al. Among authors: klingeman dm. Front Microbiol. 2016 May 31;7:794. doi: 10.3389/fmicb.2016.00794. eCollection 2016. Front Microbiol. 2016. PMID: 27303383 Free PMC article.

9

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

Utturkar SM, Cude WN, Robeson MS Jr, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TY, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA. Utturkar SM, et al. Among authors: klingeman dm. Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708. doi: 10.1128/AEM.01285-16. Print 2016 Sep 15. Appl Environ Microbiol. 2016. PMID: 27422831 Free PMC article.

10

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation.

Chen H, Yang ZK, Yip D, Morris RH, Lebreux SJ, Cregger MA, Klingeman DM, Hui D, Hettich RL, Wilhelm SW, Wang G, Löffler FE, Schadt CW. Chen H, et al. Among authors: klingeman dm. PLoS One. 2019 Jun 18;14(6):e0211310. doi: 10.1371/journal.pone.0211310. eCollection 2019. PLoS One. 2019. PMID: 31211785 Free PMC article.

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