Zhao Y - Search Results

1

TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository.

Zhao Y, Li MC, Konaté MM, Chen L, Das B, Karlovich C, Williams PM, Evrard YA, Doroshow JH, McShane LM. Zhao Y, et al. J Transl Med. 2021 Jun 22;19(1):269. doi: 10.1186/s12967-021-02936-w. J Transl Med. 2021. PMID: 34158060 Free PMC article.

2

An adaptive method for cDNA microarray normalization.

Zhao Y, Li MC, Simon R. Zhao Y, et al. BMC Bioinformatics. 2005 Feb 11;6:28. doi: 10.1186/1471-2105-6-28. BMC Bioinformatics. 2005. PMID: 15707486 Free PMC article.

3

"Sequencing-grade" screening for BRCA1 variants by oligo-arrays.

Monaco A, Menolascina F, Zhao Y, Tommasi S, Sabatino M, Fasano R, Paradiso A, Marincola FM, Wang E. Monaco A, et al. Among authors: zhao y. J Transl Med. 2008 Oct 30;6:64. doi: 10.1186/1479-5876-6-64. J Transl Med. 2008. PMID: 18973698 Free PMC article.

4

Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools.

Qi Q, Zhao Y, Li M, Simon R. Qi Q, et al. Among authors: zhao y. Bioinformatics. 2009 Feb 15;25(4):545-7. doi: 10.1093/bioinformatics/btp009. Epub 2009 Jan 8. Bioinformatics. 2009. PMID: 19131367

5

Analysis of gene expression data using BRB-ArrayTools.

Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y. Simon R, et al. Among authors: zhao y. Cancer Inform. 2007 Feb 4;3:11-7. Cancer Inform. 2007. PMID: 19455231 Free PMC article.

6

MicroRNA expression differentiates histology and predicts survival of lung cancer.

Landi MT, Zhao Y, Rotunno M, Koshiol J, Liu H, Bergen AW, Rubagotti M, Goldstein AM, Linnoila I, Marincola FM, Tucker MA, Bertazzi PA, Pesatori AC, Caporaso NE, McShane LM, Wang E. Landi MT, et al. Among authors: zhao y. Clin Cancer Res. 2010 Jan 15;16(2):430-41. doi: 10.1158/1078-0432.CCR-09-1736. Epub 2010 Jan 12. Clin Cancer Res. 2010. PMID: 20068076 Free PMC article.

7

Evaluation of normalization methods for two-channel microRNA microarrays.

Zhao Y, Wang E, Liu H, Rotunno M, Koshiol J, Marincola FM, Landi MT, McShane LM. Zhao Y, et al. J Transl Med. 2010 Jul 21;8:69. doi: 10.1186/1479-5876-8-69. J Transl Med. 2010. PMID: 20663154 Free PMC article.

8

IRF5 gene polymorphisms in melanoma.

Uccellini L, De Giorgi V, Zhao Y, Tumaini B, Erdenebileg N, Dudley ME, Tomei S, Bedognetti D, Ascierto ML, Liu Q, Simon R, Kottyan L, Kaufman KM, Harley JB, Wang E, Rosenberg SA, Marincola FM. Uccellini L, et al. Among authors: zhao y. J Transl Med. 2012 Aug 21;10:170. doi: 10.1186/1479-5876-10-170. J Transl Med. 2012. PMID: 22909381 Free PMC article.

9

Application of molecular profiling in clinical trials for advanced metastatic cancers.

Kummar S, Williams PM, Lih CJ, Polley EC, Chen AP, Rubinstein LV, Zhao Y, Simon RM, Conley BA, Doroshow JH. Kummar S, et al. Among authors: zhao y. J Natl Cancer Inst. 2015 Feb 6;107(4):djv003. doi: 10.1093/jnci/djv003. Print 2015 Apr. J Natl Cancer Inst. 2015. PMID: 25663694 Free PMC article.

10

GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials.

Zhao Y, Polley EC, Li MC, Lih CJ, Palmisano A, Sims DJ, Rubinstein LV, Conley BA, Chen AP, Williams PM, Kummar S, Doroshow JH, Simon RM. Zhao Y, et al. Cancer Inform. 2015 Mar 19;14(Suppl 2):45-55. doi: 10.4137/CIN.S17282. eCollection 2015. Cancer Inform. 2015. PMID: 25861217 Free PMC article. Review.

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