Jing Z - Search Results

1

Thermodynamics of ion binding and occupancy in potassium channels.

Jing Z, Rackers JA, Pratt LR, Liu C, Rempe SB, Ren P. Jing Z, et al. Chem Sci. 2021 Jun 2;12(25):8920-8930. doi: 10.1039/d1sc01887f. eCollection 2021 Jul 1. Chem Sci. 2021. PMID: 34257893 Free PMC article.

2

Calculating binding free energies of host-guest systems using the AMOEBA polarizable force field.

Bell DR, Qi R, Jing Z, Xiang JY, Mejias C, Schnieders MJ, Ponder JW, Ren P. Bell DR, et al. Among authors: jing z. Phys Chem Chem Phys. 2016 Nov 9;18(44):30261-30269. doi: 10.1039/c6cp02509a. Phys Chem Chem Phys. 2016. PMID: 27254477 Free PMC article.

3

Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field.

Jing Z, Qi R, Liu C, Ren P. Jing Z, et al. J Chem Phys. 2017 Oct 28;147(16):161733. doi: 10.1063/1.4985921. J Chem Phys. 2017. PMID: 29096462 Free PMC article.

4

AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids.

Zhang C, Lu C, Jing Z, Wu C, Piquemal JP, Ponder JW, Ren P. Zhang C, et al. Among authors: jing z. J Chem Theory Comput. 2018 Apr 10;14(4):2084-2108. doi: 10.1021/acs.jctc.7b01169. Epub 2018 Mar 6. J Chem Theory Comput. 2018. PMID: 29438622 Free PMC article.

5

Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields.

Lagardère L, Jolly LH, Lipparini F, Aviat F, Stamm B, Jing ZF, Harger M, Torabifard H, Cisneros GA, Schnieders MJ, Gresh N, Maday Y, Ren PY, Ponder JW, Piquemal JP. Lagardère L, et al. Chem Sci. 2017 Nov 27;9(4):956-972. doi: 10.1039/c7sc04531j. eCollection 2018 Jan 28. Chem Sci. 2017. PMID: 29732110 Free PMC article.

6

Elucidating the Phosphate Binding Mode of Phosphate-Binding Protein: The Critical Effect of Buffer Solution.

Qi R, Jing Z, Liu C, Piquemal JP, Dalby KN, Ren P. Qi R, et al. Among authors: jing z. J Phys Chem B. 2018 Jun 21;122(24):6371-6376. doi: 10.1021/acs.jpcb.8b03194. Epub 2018 Jun 11. J Phys Chem B. 2018. PMID: 29807433 Free PMC article.

7

Many-body effect determines the selectivity for Ca²⁺ and Mg²⁺ in proteins.

Jing Z, Liu C, Qi R, Ren P. Jing Z, et al. Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):E7495-E7501. doi: 10.1073/pnas.1805049115. Epub 2018 Jul 23. Proc Natl Acad Sci U S A. 2018. PMID: 30038003 Free PMC article.

8

Investigating the Association Mechanism between Rafoxanide and Povidone.

Meng F, Jing Z, Ferreira R, Ren P, Zhang F. Meng F, et al. Among authors: jing z. Langmuir. 2018 Nov 20;34(46):13971-13978. doi: 10.1021/acs.langmuir.8b03174. Epub 2018 Nov 9. Langmuir. 2018. PMID: 30360618

9

Polarizable Force Fields for Biomolecular Simulations: Recent Advances and Applications.

Jing Z, Liu C, Cheng SY, Qi R, Walker BD, Piquemal JP, Ren P. Jing Z, et al. Annu Rev Biophys. 2019 May 6;48:371-394. doi: 10.1146/annurev-biophys-070317-033349. Epub 2019 Mar 27. Annu Rev Biophys. 2019. PMID: 30916997 Free PMC article. Review.

10

Computational and Experimental Studies of Inhibitor Design for Aldolase A.

Qi R, Walker B, Jing Z, Yu M, Stancu G, Edupuganti R, Dalby KN, Ren P. Qi R, et al. Among authors: jing z. J Phys Chem B. 2019 Jul 18;123(28):6034-6041. doi: 10.1021/acs.jpcb.9b04551. Epub 2019 Jul 3. J Phys Chem B. 2019. PMID: 31268712 Free PMC article.

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