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spatialGE: A user-friendly web application to democratize spatial transcriptomics analysis.
Ospina OE, Manjarres-Betancur R, Gonzalez-Calderon G, Soupir AC, Smalley I, Tsai K, Markowitz J, Vallebuona E, Berglund A, Eschrich S, Yu X, Fridley BL. Ospina OE, et al. bioRxiv [Preprint]. 2024 Jul 2:2024.06.27.601050. doi: 10.1101/2024.06.27.601050. bioRxiv. 2024. Update in: Cancer Res. 2024 Dec 5. doi: 10.1158/0008-5472.CAN-24-2346 PMID: 39005315 Free PMC article. Updated. Preprint.
Radiomics: the process and the challenges.
Kumar V, Gu Y, Basu S, Berglund A, Eschrich SA, Schabath MB, Forster K, Aerts HJ, Dekker A, Fenstermacher D, Goldgof DB, Hall LO, Lambin P, Balagurunathan Y, Gatenby RA, Gillies RJ. Kumar V, et al. Among authors: eschrich sa. Magn Reson Imaging. 2012 Nov;30(9):1234-48. doi: 10.1016/j.mri.2012.06.010. Epub 2012 Aug 13. Magn Reson Imaging. 2012. PMID: 22898692 Free PMC article. Review.
Test-retest reproducibility analysis of lung CT image features.
Balagurunathan Y, Kumar V, Gu Y, Kim J, Wang H, Liu Y, Goldgof DB, Hall LO, Korn R, Zhao B, Schwartz LH, Basu S, Eschrich S, Gatenby RA, Gillies RJ. Balagurunathan Y, et al. J Digit Imaging. 2014 Dec;27(6):805-23. doi: 10.1007/s10278-014-9716-x. J Digit Imaging. 2014. PMID: 24990346 Free PMC article.
Quantitative computed tomographic descriptors associate tumor shape complexity and intratumor heterogeneity with prognosis in lung adenocarcinoma.
Grove O, Berglund AE, Schabath MB, Aerts HJ, Dekker A, Wang H, Velazquez ER, Lambin P, Gu Y, Balagurunathan Y, Eikman E, Gatenby RA, Eschrich S, Gillies RJ. Grove O, et al. PLoS One. 2015 Mar 4;10(3):e0118261. doi: 10.1371/journal.pone.0118261. eCollection 2015. PLoS One. 2015. PMID: 25739030 Free PMC article.
Semiquantitative Computed Tomography Characteristics for Lung Adenocarcinoma and Their Association With Lung Cancer Survival.
Wang H, Schabath MB, Liu Y, Berglund AE, Bloom GC, Kim J, Stringfield O, Eikman EA, Klippenstein DL, Heine JJ, Eschrich SA, Ye Z, Gillies RJ. Wang H, et al. Among authors: eschrich sa. Clin Lung Cancer. 2015 Nov;16(6):e141-63. doi: 10.1016/j.cllc.2015.05.007. Epub 2015 May 27. Clin Lung Cancer. 2015. PMID: 26077095 Free PMC article.
Differential association of STK11 and TP53 with KRAS mutation-associated gene expression, proliferation and immune surveillance in lung adenocarcinoma.
Schabath MB, Welsh EA, Fulp WJ, Chen L, Teer JK, Thompson ZJ, Engel BE, Xie M, Berglund AE, Creelan BC, Antonia SJ, Gray JE, Eschrich SA, Chen DT, Cress WD, Haura EB, Beg AA. Schabath MB, et al. Among authors: eschrich sa. Oncogene. 2016 Jun 16;35(24):3209-16. doi: 10.1038/onc.2015.375. Epub 2015 Oct 19. Oncogene. 2016. PMID: 26477306 Free PMC article.
138 results