Szubin R - Search Results

1

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility.

Sastry AV, Dillon N, Anand A, Poudel S, Hefner Y, Xu S, Szubin R, Feist AM, Nizet V, Palsson B. Sastry AV, et al. Among authors: szubin r. mSphere. 2021 Aug 25;6(4):e0044321. doi: 10.1128/mSphere.00443-21. Epub 2021 Aug 25. mSphere. 2021. PMID: 34431696 Free PMC article.

2

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Seo SW, Kim D, Latif H, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: szubin r. Nat Commun. 2014 Sep 15;5:4910. doi: 10.1038/ncomms5910. Nat Commun. 2014. PMID: 25222563 Free PMC article.

3

Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium.

LaCroix RA, Sandberg TE, O'Brien EJ, Utrilla J, Ebrahim A, Guzman GI, Szubin R, Palsson BO, Feist AM. LaCroix RA, et al. Among authors: szubin r. Appl Environ Microbiol. 2015 Jan;81(1):17-30. doi: 10.1128/AEM.02246-14. Epub 2014 Oct 10. Appl Environ Microbiol. 2015. PMID: 25304508 Free PMC article.

4

A streamlined ribosome profiling protocol for the characterization of microorganisms.

Latif H, Szubin R, Tan J, Brunk E, Lechner A, Zengler K, Palsson BO. Latif H, et al. Among authors: szubin r. Biotechniques. 2015 Jun 1;58(6):329-32. doi: 10.2144/000114302. eCollection 2015 Jun. Biotechniques. 2015. PMID: 26054770 Free article.

5

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli.

Seo SW, Kim D, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: szubin r. Nat Commun. 2015 Aug 10;6:7970. doi: 10.1038/ncomms8970. Nat Commun. 2015. PMID: 26258987 Free PMC article.

6

Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655.

Seo SW, Kim D, Szubin R, Palsson BO. Seo SW, et al. Among authors: szubin r. Cell Rep. 2015 Aug 25;12(8):1289-99. doi: 10.1016/j.celrep.2015.07.043. Epub 2015 Aug 13. Cell Rep. 2015. PMID: 26279566 Free article.

7

Multi-omic data integration enables discovery of hidden biological regularities.

Ebrahim A, Brunk E, Tan J, O'Brien EJ, Kim D, Szubin R, Lerman JA, Lechner A, Sastry A, Bordbar A, Feist AM, Palsson BO. Ebrahim A, et al. Among authors: szubin r. Nat Commun. 2016 Oct 26;7:13091. doi: 10.1038/ncomms13091. Nat Commun. 2016. PMID: 27782110 Free PMC article.

8

Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655.

Seo SW, Gao Y, Kim D, Szubin R, Yang J, Cho BK, Palsson BO. Seo SW, et al. Among authors: szubin r. Sci Rep. 2017 May 19;7(1):2181. doi: 10.1038/s41598-017-02110-7. Sci Rep. 2017. PMID: 28526842 Free PMC article.

9

Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance.

Choe D, Szubin R, Dahesh S, Cho S, Nizet V, Palsson B, Cho BK. Choe D, et al. Among authors: szubin r. Sci Rep. 2018 Feb 2;8(1):2215. doi: 10.1038/s41598-018-20661-1. Sci Rep. 2018. PMID: 29396540 Free PMC article.

10

ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions.

Latif H, Federowicz S, Ebrahim A, Tarasova J, Szubin R, Utrilla J, Zengler K, Palsson BO. Latif H, et al. Among authors: szubin r. PLoS One. 2018 May 17;13(5):e0197272. doi: 10.1371/journal.pone.0197272. eCollection 2018. PLoS One. 2018. PMID: 29771928 Free PMC article.

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