Ramírez JC - Search Results

1

Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations.

Song J, Carey M, Zhu H, Miao H, Ramírez JC, Wu H. Song J, et al. Among authors: ramirez jc. Int J Comput Biol Drug Des. 2018;11(1-2):135-153. doi: 10.1504/ijcbdd.2018.10011910. Epub 2018 Mar 28. Int J Comput Biol Drug Des. 2018. PMID: 34531927 Free PMC article.

2

Investigation of temporal and spatial heterogeneities of the immune responses to Bordetella pertussis infection in the lung and spleen of mice via analysis and modeling of dynamic microarray gene expression data.

Deng N, Ramirez JC, Carey M, Miao H, Arias CA, Rice AP, Wu H. Deng N, et al. Among authors: ramirez jc. Infect Dis Model. 2019 Jun 7;4:215-226. doi: 10.1016/j.idm.2019.06.001. eCollection 2019. Infect Dis Model. 2019. PMID: 31236525 Free PMC article.

3

A big data pipeline: Identifying dynamic gene regulatory networks from time-course Gene Expression Omnibus data with applications to influenza infection.

Carey M, Ramírez JC, Wu S, Wu H. Carey M, et al. Among authors: ramirez jc. Stat Methods Med Res. 2018 Jul;27(7):1930-1955. doi: 10.1177/0962280217746719. Stat Methods Med Res. 2018. PMID: 29846143 Free PMC article.

4

Gene expression dynamic analysis reveals co-activation of Sonic Hedgehog and epidermal growth factor followed by dynamic silencing.

Maroufy V, Shah P, Asghari A, Deng N, Le RNU, Ramirez JC, Yaseen A, Zheng WJ, Umetani M, Wu H. Maroufy V, et al. Among authors: ramirez jc. Oncotarget. 2020 Apr 14;11(15):1358-1372. doi: 10.18632/oncotarget.27547. eCollection 2020 Apr 14. Oncotarget. 2020. PMID: 32341755 Free PMC article.

5

Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis.

Chen G, Ramírez JC, Deng N, Qiu X, Wu C, Zheng WJ, Wu H. Chen G, et al. Among authors: ramirez jc. Database (Oxford). 2019 Jan 1;2019:bay145. doi: 10.1093/database/bay145. Database (Oxford). 2019. PMID: 30649296 Free PMC article.

6

Can natural selection encode Bayesian priors?

Ramírez JC, Marshall JAR. Ramírez JC, et al. J Theor Biol. 2017 Aug 7;426:57-66. doi: 10.1016/j.jtbi.2017.05.017. Epub 2017 May 20. J Theor Biol. 2017. PMID: 28536034

7

Physicochemical, techno-functional, biochemical and structural characterization of a protein isolate from groundnut (Arachis hypogaea L.) paste treated with high-intensity ultrasound.

Rivera ÁER, Ulloa JA, Silvas JEU, Ramírez JCR, Vazquez JAR. Rivera ÁER, et al. Among authors: ramirez jcr. Food Chem. 2025 Feb 1;464(Pt 3):141848. doi: 10.1016/j.foodchem.2024.141848. Epub 2024 Nov 2. Food Chem. 2025. PMID: 39509893

8

GALADRIEL: A facility for advancing engineering science relevant to rep-rated high energy density physics and inertial fusion energy experiments.

Collins GW 4th, McGuffey C, Jaris M, Vollmer D, Dautt-Silva A, Linsenmayer E, Keller A, Ramirez JC, Sammuli B, Margo M, Manuel MJ. Collins GW 4th, et al. Among authors: ramirez jc. Rev Sci Instrum. 2024 Nov 1;95(11):113501. doi: 10.1063/5.0220160. Rev Sci Instrum. 2024. PMID: 39485093

9

Establishment and Characterization of a Stable Producer Cell Line Generation Platform for the Manufacturing of Clinical-Grade Lentiviral Vectors.

Arrasate A, Bravo I, Lopez-Robles C, Arbelaiz-Sarasola A, Ugalde M, Meijueiro ML, Zuazo M, Valero A, Banos-Mateos S, Ramirez JC, Albo C, Lamsfus-Calle A, Fertin MJ. Arrasate A, et al. Among authors: ramirez jc. Biomedicines. 2024 Oct 4;12(10):2265. doi: 10.3390/biomedicines12102265. Biomedicines. 2024. PMID: 39457578 Free PMC article.

10

Development of hard X-ray photoelectron spectroscopy in liquid cells using optimized microfabricated silicon nitride membranes.

Capone F, Muntada O, Ramírez JC, Esplandiu MJ, Dedryvère R, Grimaud A, Lassalle-Kaiser B, Céolin D, Pérez-Murano F, Rueff JP, Fraxedas J. Capone F, et al. Among authors: ramirez jc. J Synchrotron Radiat. 2024 Nov 1;31(Pt 6):1505-1513. doi: 10.1107/S1600577524008865. Epub 2024 Oct 15. J Synchrotron Radiat. 2024. PMID: 39405044 Free PMC article.

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