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Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level.
Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E, John M, Lindsey BB, Keeley AJ, Rowland-Jones SL, Swanson MS, Ostrov DA, Bubenik JL, Das SR, Sidney J, Sette A; COVID-19 Genomics UK (COG-UK) consortium; de Silva TI, Phillips E, Mallal S. Leary S, et al. Among authors: pakala s. Pathog Immun. 2021 Aug 20;6(2):27-49. doi: 10.20411/pai.v6i2.460. eCollection 2021. Pathog Immun. 2021. PMID: 34541432 Free PMC article.
COVID-19 severity from Omicron and Delta SARS-CoV-2 variants.
Wrenn JO, Pakala SB, Vestal G, Shilts MH, Brown HM, Bowen SM, Strickland BA, Williams T, Mallal SA, Jones ID, Schmitz JE, Self WH, Das SR. Wrenn JO, et al. Influenza Other Respir Viruses. 2022 Sep;16(5):832-836. doi: 10.1111/irv.12982. Epub 2022 Apr 13. Influenza Other Respir Viruses. 2022. PMID: 35415869 Free PMC article.
Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus's Role in Virulence.
Losada L, Sugui JA, Eckhaus MA, Chang YC, Mounaud S, Figat A, Joardar V, Pakala SB, Pakala S, Venepally P, Fedorova N, Nierman WC, Kwon-Chung KJ. Losada L, et al. Among authors: pakala sb, pakala s. PLoS Pathog. 2015 Apr 24;11(4):e1004834. doi: 10.1371/journal.ppat.1004834. eCollection 2015 Apr. PLoS Pathog. 2015. PMID: 25909486 Free PMC article.
Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality.
Budhraja A, Basu A, Gheware A, Abhilash D, Rajagopala S, Pakala S, Sumit M, Ray A, Subramaniam A, Mathur P, Nambirajan A, Kumar S, Gupta R, Wig N, Trikha A, Guleria R, Sarkar C, Gupta I, Jain D. Budhraja A, et al. Among authors: pakala s. Dis Model Mech. 2022 May 1;15(5):dmm049572. doi: 10.1242/dmm.049572. Epub 2022 Jun 6. Dis Model Mech. 2022. PMID: 35438176 Free PMC article.
The binary protein-protein interaction landscape of Escherichia coli.
Rajagopala SV, Sikorski P, Kumar A, Mosca R, Vlasblom J, Arnold R, Franca-Koh J, Pakala SB, Phanse S, Ceol A, Häuser R, Siszler G, Wuchty S, Emili A, Babu M, Aloy P, Pieper R, Uetz P. Rajagopala SV, et al. Among authors: pakala sb. Nat Biotechnol. 2014 Mar;32(3):285-290. doi: 10.1038/nbt.2831. Epub 2014 Feb 23. Nat Biotechnol. 2014. PMID: 24561554 Free PMC article.
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.
Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC. Joardar V, et al. Among authors: pakala sb, pakala s. BMC Genomics. 2012 Dec 12;13:698. doi: 10.1186/1471-2164-13-698. BMC Genomics. 2012. PMID: 23234273 Free PMC article.
117 results